Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3556 ATGTTGATTCGGCGGTTGCCTTGGACGGCGGCGCCACCAGTTCGGTTACACTTCGGTGGAGTCTGCGTTCCCATTCGAACCTCTTCCTTCTCATCCTCTTGCTCCACCTCCAGCTCAAGCGTTCATCTTCCTCAACACTCTGAAAAACCTGAGAATGAAACAGATAATCGTCGCCTGCATACTTTGAAGCCCGGTCTTTATCTTGTAGGAACACCGATTGGGAATCTCGAAGATATCACCCTCAGGGCTATCCGGGTACTGAGTTCAGCAGATGTGATACTCTCAGAAGACACGAGGCACTCTGGGAAGCTGCTTCATCACTACAATATCAAAACACCCCTTATGAGTTACCACAAGTTCAATGAATCACAAAGGGAACAGGTTGTGCTGAAGAGGTTGAAGCAGGGTGAGATTGTGGCACTTATAAGTGATGCTGGAACACCTGGCATTAGTGATCCTGGTACAGAATTGGCCAAATTATGTGTTAGTGAAAATGTCCCTGTTATTCCAATCCCAGGACCTTGTGCTTTGGTTTCAGCTCTTTCTGCCTCTGGTTTACCCACTGATGAATTTACATTTGTTGGTTTTCTTCCAAAACACGCGGGAACAAGAAGAAAAAAGCTCACGGTTTCGGCTGATCAAACCACAACACAAATATTTTATGTTCCGCCTCACAAGCTTTCTCAGTTTCTTGAGGAGGGTTCTTCTGTTTTTGGTGATACAAGGCGATGTGTTATTGCTCGAGAAATTACTAAGTTACATGAAGAGTTTTGGCGTGGCACTCTTTGTGAAGCCAAGGAAGTATTTTCTATTCGTCAGCCAAAGGGAGAACTAACCATATTGATTGAAGGCCAAGCAAATTCTAAAGTTGAACCTCCATCAGATATTCAACTTGAAAGTGAACTAAGAGAATTAATTGCAAGTGGCGAGAGTCTTTCCACGGCTGTCAAATTGGTTACTGGTAGAACATCAGTGAGTAGAAAAGCTGTATATTCACTTGCACTGAGTAAATTTGGGAAGCAACTTGAAGTGGAAGATGATTCAAATTAA 1050 0.4362 MLIRRLPWTAAPPVRLHFGGVCVPIRTSSFSSSCSTSSSSVHLPQHSEKPENETDNRRLHTLKPGLYLVGTPIGNLEDITLRAIRVLSSADVILSEDTRHSGKLLHHYNIKTPLMSYHKFNESQREQVVLKRLKQGEIVALISDAGTPGISDPGTELAKLCVSENVPVIPIPGPCALVSALSASGLPTDEFTFVGFLPKHAGTRRKKLTVSADQTTTQIFYVPPHKLSQFLEEGSSVFGDTRRCVIAREITKLHEEFWRGTLCEAKEVFSIRQPKGELTILIEGQANSKVEPPSDIQLESELRELIASGESLSTAVKLVTGRTSVSRKAVYSLALSKFGKQLEVEDDSN* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3556 349 SUPERFAMILY Tetrapyrrole methylase 64 282 IPR035996 GO:0008168
Lja1g3556 349 MobiDBLite consensus disorder prediction 36 58 - -
Lja1g3556 349 PANTHER RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE I 49 346 IPR008189 GO:0008168
Lja1g3556 349 Coils Coil 342 349 - -
Lja1g3556 349 TIGRFAM TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 66 335 IPR008189 GO:0008168
Lja1g3556 349 Hamap Ribosomal RNA small subunit methyltransferase I [rsmI]. 65 284 IPR008189 GO:0008168
Lja1g3556 349 PIRSF MTase_YraL 53 340 IPR008189 GO:0008168
Lja1g3556 349 Pfam Tetrapyrrole (Corrin/Porphyrin) Methylases 66 264 IPR000878 GO:0008168
Lja1g3556 349 Gene3D - 173 290 IPR014776 GO:0008168
Lja1g3556 349 CDD RsmI 67 283 IPR008189 GO:0008168
Lja1g3556 349 ProSitePatterns RsmI AdoMet-dependent methyltransferase protein family signature. 143 154 IPR018063 GO:0008168
Lja1g3556 349 Gene3D - 50 172 IPR014777 GO:0008168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3556 K07056 - gmx:100819709 545.428
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3556 1 44286466 44290225 Lja1g3556 1 44286466 44290225 ECH