Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3555 ATGGCTGTAGACACGTTTCTTCTGTTGGCACTCGCTATGTGCCGTTTGATTGTGACGGTTGGGTTGACGGTGGTCCCGACAGAGCTCCTCCACGTGGAACTGGCCGGTCAGCTGAGCGTTGACACGTCGGAGGTGGAAGCGGCTTCGGTGGACTTCGGGATGCTGAGCAAAGGGGAGCCCCCGTTAGCGGTGGTGCACCCGGTGTCAGCGGAGGACGTGGCTCAGGTGGTTAAGGCGGCGTATGACGGTGGGTTCACAGTGTCGGCGAGAGGGCACGGGCATTCCATTAACGGGCAAGCGCTGATGAAAGAGAGAAGTAGGGGGAGGAGAGGGGTGGTGATTGAAATGGTGAAGGGTCACGGTGGTGATGGTGGTGGTCCTCCTCCGCCGCTAGTGTCAGAGAAGGGAAAGTATGTGGATGTGTGGGGAGGGGAGTTGTGGATAGAGGTGCTGAGGGCAACACTTGAGCATGGATTGGCACCAATGTCTTGGACTGATTACTTGTATTTGTCTGTGGGTGGAACTCTGTCTAACGCGGGTATTAGTGGACAAACCTTCAATTACGGCCCTCAAATCTCCAATGTTCTTGAACTCGATGTTGTTACAGGAAAGGGTGAGGTGTTGACGTGTTCTGAAGATGGTAACTCAGAGCTGTTCCATGGCGTTCTTGGTGGTCTAGGACAATTTGGAATCATCACCAGGGCTAGAATTGCTCTCCAACCAGCTCCTCACAGAGTTCGTTGGATACGGGTGCTGTACTCCAATTTTTCAACCTTCTGTAAGGACCAGGAGTTTCTCATCTCTCTGCAAGGGAAACATGCAAGCCAGAGATTCGATTACGTTGAGGGTTTTGTAATAGTGGATGAAGGACTCATCAATAATTGGAGATCCTCCTTCTTTTCACCTAGTAACCCTGTTAAAATCACTTCCCTTAATGCTCATGGAGATGTTTTGTACTGCTTGGAGATTACCAAAGATTACCACCAAGGAAACGCAGATTCTATTGATGAGGAAATAGAGGCTCTATTGAAAAAGTTAGATTTTATACAAACATCAGTGTTCACTACGGACGTGCCTTATGTCGATTTTCTGGATCGTGTCCATAAAGCAGAGCTAAAGCTCAGATCCAAGGGTTTGTGGGACGTCCCACATCCATGGCTCAACCTTTTTGTTCCAAAATCAAGGATTAAAGACTTTGACAAGGGTGTGTTCAAGGGCATTCTGGGAAATAGCACAAGTGGGCCTATCCTCATATACCCTATGAACAAACACAAGTGGGACCATCGGAGCTCGGCAGTGACGCCAGAAGAGGAGATGTTTTACCTGGTAGCGTTTCTGAGATCAGCCTTGGATACAGAGGCACTGGAGTACCTGACTAAGCAGAACCGTCAGATTCTAAGATTCTGCCAAGATTCAGAGATCAAGGTGAAACAGTACATGCCCCATTACACAACACAGCAGGAGTGGATGGACCACTTTGGGGATAAGTGGACCCATTTCCAGGCCTTGAAGATGCAATTCGACCCCCGCAGAATCTTAGCCACAGGCCAGCAAATATTTCAATTTGATGAGCCATATACAGATGATATGATATGTAGCAAAACAGCAAATTCAGATTTGGAAGGACAACAATGGAAACACATAAAATAA 1650 0.483 MAVDTFLLLALAMCRLIVTVGLTVVPTELLHVELAGQLSVDTSEVEAASVDFGMLSKGEPPLAVVHPVSAEDVAQVVKAAYDGGFTVSARGHGHSINGQALMKERSRGRRGVVIEMVKGHGGDGGGPPPPLVSEKGKYVDVWGGELWIEVLRATLEHGLAPMSWTDYLYLSVGGTLSNAGISGQTFNYGPQISNVLELDVVTGKGEVLTCSEDGNSELFHGVLGGLGQFGIITRARIALQPAPHRVRWIRVLYSNFSTFCKDQEFLISLQGKHASQRFDYVEGFVIVDEGLINNWRSSFFSPSNPVKITSLNAHGDVLYCLEITKDYHQGNADSIDEEIEALLKKLDFIQTSVFTTDVPYVDFLDRVHKAELKLRSKGLWDVPHPWLNLFVPKSRIKDFDKGVFKGILGNSTSGPILIYPMNKHKWDHRSSAVTPEEEMFYLVAFLRSALDTEALEYLTKQNRQILRFCQDSEIKVKQYMPHYTTQQEWMDHFGDKWTHFQALKMQFDPRRILATGQQIFQFDEPYTDDMICSKTANSDLEGQQWKHIK* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3555 549 Gene3D - 245 479 IPR016170 -
Lja1g3555 549 PANTHER GULONOLACTONE OXIDASE 7 521 - -
Lja1g3555 549 Gene3D - 116 244 IPR016169 -
Lja1g3555 549 SUPERFAMILY FAD-binding/transporter-associated domain-like 38 241 IPR036318 GO:0050660
Lja1g3555 549 Pfam FAD binding domain 61 211 IPR006094 GO:0050660
Lja1g3555 549 Gene3D - 41 520 IPR016167 -
Lja1g3555 549 ProSitePatterns Oxygen oxidoreductases covalent FAD-binding site. 61 94 IPR006093 GO:0016491
Lja1g3555 549 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 243 520 IPR015345 GO:0009690|GO:0019139|GO:0050660
Lja1g3555 549 PANTHER CYTOKININ OXIDASE 5-RELATED 7 521 - -
Lja1g3555 549 SUPERFAMILY FAD-linked oxidases, C-terminal domain 243 520 IPR016164 GO:0003824|GO:0050660
Lja1g3555 549 ProSiteProfiles PCMH-type FAD-binding domain profile. 57 242 IPR016166 GO:0071949
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3555 Lja-Chr1 44280475 44285190 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3555 K00279 - gmx:100790584 850.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3555 1 44280475 44285190 Lja1g3555 1 44280475 44285190 ECH