Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3552 ATGACTCGTGTGTGTTGTTCCTTTCCACACTTTCTCCTTCTCATTCTCCTTTTCGTTTTCTCGTCCTTCTTGTCCTCCTCTGCTTCTTCCGACACCTCTGAACTCTTCGAAACCTGGTGTAAGGAACATGGCAAAACATACTCTTCTGAACAAGAGAAACACCACAGGTTCAGAGTGTTTGAGGATAACTATGCCTTTGTGGTCCAACATAATCAAATTGGGAACTCCAGTTTCACCCTTTCGCTAAACACTTTCGCTGATCTCACCCACCATGAGTTCAAAGCCACTCGTCTTGGCCTTCCCACTTCACTGCTTAGATTCAAACATGCCCAGAATCAACAAGGCTATGATTATGTTGATGAGTACAACGAGGTTCCTTCTGAGATTGATTGGAGAAAGAGTGGTGCTGTTACTGCTGTCAAAGACCAAGGAAGCTGTGGTGCTTGTTGGTCCTTCTCAGCTACCGGCGCTATTGAAGGTATAAATAAGATTGTCACAGGTTCTCTTCTAAGTCTTTCAGAACAAGAACTAGTAGATTGTGATACAAGCTATAATGACGGTTGTAATGGAGGACTCATGGACTATGCATACCAATTTGTTATTGATAACCAAGGGATTGATACTGAGGAAGATTATCCATATCAAGCTCATCAACGGCCGTGCAATAAAAACAAGTTAAAAAGACGCGTTGTTACAATTGACGGTTATATTGACGTTCCCTCAAATGATGAGAAAAAGCTACTAAAGGTTGTTGCATCCCAGCCTGTCAGTGTAGGCATATGTGGTAGTGAAAGGGCTTTTCAGTTATACTCAAAGGGTATCTTCACCGGACCATGTTCAACTTCTTTGGATCATGCCGTGTTGATTGTAGGATATGGTTCTGAAAATGGAGTAGATTATTGGATTTTGAAGAACTCATGGGGAACTCGTTGGGGAATGAACGGTTACATTTACATGCAACGAAACACTGAGAATTCTGCAGGGCTATGTGGAATCAACATGTTAGCTTCATATCCAACCAAGACGAGCCCTAATCCTCCCTCCCCATCGCCCCCAAATCCCACAAAGTGTAATCTATTTACTTACTGTTCAGCAGGGGAAACATGTTGTTGTGCTAAGAGCCTTCTTGGAGTAATATGTTTAAAGTGGAAATGCTGTGGATTAACTTCTGCTGTGTGTTGTAAGGACAAGCGCAGCTGTTGCCCTCAAGATTATCCTGTTTGTGATACAAGAAGGGGTCAATGTCTTAAGAAAGTTGCAAATGGGACGATCACAATGGCATCTGATAGCAAAGACCCTTTCCATCAGCCCAGAGGTTGGAAATCTCAATGA 1332 0.4264 MTRVCCSFPHFLLLILLFVFSSFLSSSASSDTSELFETWCKEHGKTYSSEQEKHHRFRVFEDNYAFVVQHNQIGNSSFTLSLNTFADLTHHEFKATRLGLPTSLLRFKHAQNQQGYDYVDEYNEVPSEIDWRKSGAVTAVKDQGSCGACWSFSATGAIEGINKIVTGSLLSLSEQELVDCDTSYNDGCNGGLMDYAYQFVIDNQGIDTEEDYPYQAHQRPCNKNKLKRRVVTIDGYIDVPSNDEKKLLKVVASQPVSVGICGSERAFQLYSKGIFTGPCSTSLDHAVLIVGYGSENGVDYWILKNSWGTRWGMNGYIYMQRNTENSAGLCGINMLASYPTKTSPNPPSPSPPNPTKCNLFTYCSAGETCCCAKSLLGVICLKWKCCGLTSAVCCKDKRSCCPQDYPVCDTRRGQCLKKVANGTITMASDSKDPFHQPRGWKSQ* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3552 443 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 21 374 - -
Lja1g3552 443 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 300 319 IPR025661 -
Lja1g3552 443 CDD Peptidase_C1A 126 339 IPR039417 -
Lja1g3552 443 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 283 293 IPR025660 -
Lja1g3552 443 SMART GRAN_2 357 415 IPR000118 -
Lja1g3552 443 PANTHER OS05G0508300 PROTEIN 21 374 - -
Lja1g3552 443 Pfam Papain family cysteine protease 125 339 IPR000668 GO:0006508|GO:0008234
Lja1g3552 443 SMART pept_c1 125 340 IPR000668 GO:0006508|GO:0008234
Lja1g3552 443 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 143 154 IPR000169 -
Lja1g3552 443 SUPERFAMILY Cysteine proteinases 32 340 IPR038765 -
Lja1g3552 443 Gene3D Granulin 355 424 IPR037277 -
Lja1g3552 443 SUPERFAMILY Granulin repeat 354 388 - -
Lja1g3552 443 PRINTS Papain cysteine protease (C1) family signature 285 295 IPR000668 GO:0006508|GO:0008234
Lja1g3552 443 PRINTS Papain cysteine protease (C1) family signature 300 306 IPR000668 GO:0006508|GO:0008234
Lja1g3552 443 PRINTS Papain cysteine protease (C1) family signature 143 158 IPR000668 GO:0006508|GO:0008234
Lja1g3552 443 SMART Inhibitor_I29_2 36 93 IPR013201 -
Lja1g3552 443 Pfam Cathepsin propeptide inhibitor domain (I29) 36 93 IPR013201 -
Lja1g3552 443 Pfam Granulin 368 416 IPR000118 -
Lja1g3552 443 Gene3D Cysteine proteinases 22 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3552 Lja-Chr1 44238960 44241950 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3552 - - mtr:MTR_3g112430 669.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3552 1 44238960 44241950 Lja1g3552 1 44238960 44241950 ECH