Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3549 ATGGGATTCATCTGGCATGGCTATGCTCTTCTTCTACTTCCAGCCTTGGTTTTTATTAGTGAGATATGTTTCTGCATGGGTGGAAAAACCAGCACTTTTCTTAGAAATGATTATTTATCGTTGGACATGCCATTAAACAGTGACGTGTTTCGTGTGCCTCCTGGTTACAATGCTCCTCAGCAGGTGCACATAACACAAGGAGATCATGTGGGGAAGGCTGTGATCATCTCTTGGATTACCCCTGATGAACCTGGTTCAAGTACCGTGATTTATTGGGCCGAAAACAGTAGTGATTTCAAGTGGCAAGCTGATGGGTTTTTCCTTACCTACAAATACTTCAACTACACCTCTGGTTACATTCATCACTGCACTATTCAGAATTTGGAGTTTGACACCAAATACTACTATGAGGTTGGAATAGGGAATACCACTCGCCAGTTCTGGTTCAAAACTCCTCCCACTGTTGGCCCAGATGTTCCTTACACATTTGGTCTAATTGGGGATCTAGGCCAAACTTATAATTCCAACACCACTCTTACCCATTATGAACTAAGCCCAGTGAAAGGCCAGACAATACTGTATGTAGGGGATCTCTCTTATGCAGATGACCATCCATTTCATGACAACAACAGATGGGATACTTGGGGAAGATTCATTGAGAGAGTTGCTGCCTATCAGCCTTGGATATGGACTGCAGGGAATCATGAACTTGATTTTGCTCCAGAACTTGGTGAAACTAGACCATTCAAGCCTTACACTTCTCGTTACCATGTACCCTACAAAGCATCAAATAGTACATCTCCATTGTGGTACTCTATCAAGAGAGCTTCAGCATACGTCATTGTTATGTCTTCTTACTCAGCATATGGTAAATACACTCCTCAGTATAAATGGCTTGAGAAGGAGCTGCCCAAGGTGAACAGGACAGAGACACCATGGCTTATAGTTCTCATTCATTGTCCAATATATAATAGTTACAAGGCTCACTATATGGAAGGGGAGACGGTTAGAGTAATGTATGAGAAGTGGTTTGTGGAGTATAAAGTTGATGTTGTATTTTCTGGTCATGTCCATGCTTATGAAAGATCTGAACGTGTATCAAACATTGGATATAATATTGTAAATGGAATTTGCTTACCCATCAATGACCAATCTGCCCCAGTTTACATAACGATTGGAGATGGAGGAAATTTAGAAGGATTGGCAACTGCTATGACTGAGCCCCAGCCAAGATACTCTGCGTTCCGTGAAGCCAGTTTCGGGCATGGGATTCTTGAGATAAAGAACAGAACTCATGCCCGTTTTGGTTGGAATCGTATTCAAGATGGATATGCTGTGGAGGCTGATTCTATATGGTTGCACAATAGACACTGGAGCCACCCAAAAGAAGTATCTCTTGCTGCATTTCGGTAG 1413 0.4225 MGFIWHGYALLLLPALVFISEICFCMGGKTSTFLRNDYLSLDMPLNSDVFRVPPGYNAPQQVHITQGDHVGKAVIISWITPDEPGSSTVIYWAENSSDFKWQADGFFLTYKYFNYTSGYIHHCTIQNLEFDTKYYYEVGIGNTTRQFWFKTPPTVGPDVPYTFGLIGDLGQTYNSNTTLTHYELSPVKGQTILYVGDLSYADDHPFHDNNRWDTWGRFIERVAAYQPWIWTAGNHELDFAPELGETRPFKPYTSRYHVPYKASNSTSPLWYSIKRASAYVIVMSSYSAYGKYTPQYKWLEKELPKVNRTETPWLIVLIHCPIYNSYKAHYMEGETVRVMYEKWFVEYKVDVVFSGHVHAYERSERVSNIGYNIVNGICLPINDQSAPVYITIGDGGNLEGLATAMTEPQPRYSAFREASFGHGILEIKNRTHARFGWNRIQDGYAVEADSIWLHNRHWSHPKEVSLAAFR* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3549 470 Gene3D - 156 465 IPR029052 -
Lja1g3549 470 PANTHER FE(3+)-ZN(2+) PURPLE ACID PHOSPHATASE 12 15 465 - -
Lja1g3549 470 Pfam Iron/zinc purple acid phosphatase-like protein C 386 443 IPR025733 -
Lja1g3549 470 PANTHER ACID PHOSPHATASE RELATED 15 465 IPR039331 GO:0003993
Lja1g3549 470 SUPERFAMILY Purple acid phosphatase, N-terminal domain 38 153 IPR008963 GO:0003993|GO:0046872
Lja1g3549 470 SUPERFAMILY Metallo-dependent phosphatases 157 459 IPR029052 -
Lja1g3549 470 Pfam Purple acid Phosphatase, N-terminal domain 59 151 IPR015914 GO:0003993|GO:0046872
Lja1g3549 470 Pfam Calcineurin-like phosphoesterase 162 360 IPR004843 GO:0016787
Lja1g3549 470 CDD MPP_PAPs 157 455 IPR041792 -
Lja1g3549 470 Gene3D - 58 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3549 Lja-Chr1 44228804 44231491 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3549 118 425 Miscellaneous Gene Families AT1G13900 25.275 2.91e-18 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3549 K22390 - gmx:100794124 862.833
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3549 1 44228804 44231491 Lja1g3549 1 44228804 44231491 ECH