Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3547 ATGGAATTAAGTACCTTGGTTAGCAATGGTCGCTTGGATCTGCATGGTAGGATTGCTGACAAACAAACAACTGGAGGATGGAAGGCATCGCCCTTTATCATAGTGAACGAAGTGACAGAGAGGTTGGCATTCTTTTCAATTGCAGTGAACATGGTGGCTTACTTGTTTTCCGAAATGCATCAATCACTTCCGGATGCTGCTACCCATGTCACGGATTGGATTGGAGCTGCCTATGTCCTCACCCTTCTAGGAGCCTTTCTAGCAGATGCTTACTTGGGTCGCTTCAGAACCATCCTTATTTTCTCTGCTGTCTATGCTGCGGGGATGATTTTGCTGACAGTTTCAGCTTCTCTAGACAGCTTACGCCCGGATAAATGCATTGTGAAACCATGTAAACAAGCAAGCCAAGGCCAAACAGCATTCCTGTACGGAGCACTTGCCCTGATTGCTTTAGGTACTGGTGGAATCAAGCCTTGTGTGTCCTCGTTTGGAGCAGACCAATTCGATGAGGGAGATGAGAAAGAAGTCCAAAAGAAATTCGCTTTCTTCAACTGGTTCTTCTTCGCCATCAACATGGGTGCCCTCCTTGGAATAACCGTTCTAGTTTACACCCAAGAGAAATTAGGCTGGGGTTGGGGTTTTGGAATACCCACAGGTGCCACATTTGCCTCTATCATTGTCCTACTAGCTGGTGTCCGGTATTACCGTTATCAAAAGCCAATGGGAAGCCCTTTCACCAGGTTCCTTCAAGTTATAGTAGCCTCCATTAGAAATCACCAAAGAGGAATCTCAGTAGGATCAGAAACTCCTCTCTATGAGGTCCAAACCACGCAGTCCGATATAATTGGCGCTCGCAAGCTTCCTCACACTCCACAATACAGGTTTTTTGATAAAGCAGCAGTGGTGATCACAGAAGGGGAAACTCACACTCACAGAAGCAACCGCTGGCGCATATGCACAGTGACACAGGTGGAGGAGTTGAAATCCTTCATCAGAGTCCTTCCGGTGTGGGCTTCCACCATCGCCCTCTCCGTTTCCTTCGCTCAGCTCTCAACCTTCTTCATAAGCCAAGCCAACATCACAGACCGAAGACTCGGAGACAGCTTCAAAATCCCCGCCGGCTCCGTACCGGTGTTCAGCGCCGTCAACGCCCTCCTCCTCGTCCCCCTCTACGAGAAATTCATCGTCCCATTCCTCCGCAACCGCTACGGCCACCCGCGCGGAATAACGTCACTGCAGCGAATGGGCGTCGGACTCTTCATCTCCATCTTCGCCATGGCTTCGGCGGCGCTGGTGGAGAAGAAAAGACGTGAACACTACGCGCAGCCGTTCAGCATGAGCGTGTTCTGGTTGCTGCCGCAATTCTTTCTGATGGGGAGTGCAGAGGTGTTCACTTACGTGGGGCAGTTGGAGTTTTTCTATGATGAGGCGACGGATGGGACGAGGAGTATTAGTAGTGCGATGTTTCTGGCGGAGATTGGGATCGGAAGCTGGCTGAGCACGGCGTTGGTGAAGATTGTTGAAGGTGCTAGTGGTGGACAGCAGAGAGGGTGGCTAAGGAATGATCTGAATAGCAGTAAGTTGGACTATTTTTACTGGATTTTGACTGGTGTTAATGTGATCAATTTCTTGGTTTATTTGGCGGCGGCGCGTTGTTTCAGAGGGAAAGGAGCACTTGCACAAGTGAGGGATGAGGATGAGAGCATGGTGAAATTCAATGGAGTCTCTCTCTGA 1734 0.4965 MELSTLVSNGRLDLHGRIADKQTTGGWKASPFIIVNEVTERLAFFSIAVNMVAYLFSEMHQSLPDAATHVTDWIGAAYVLTLLGAFLADAYLGRFRTILIFSAVYAAGMILLTVSASLDSLRPDKCIVKPCKQASQGQTAFLYGALALIALGTGGIKPCVSSFGADQFDEGDEKEVQKKFAFFNWFFFAINMGALLGITVLVYTQEKLGWGWGFGIPTGATFASIIVLLAGVRYYRYQKPMGSPFTRFLQVIVASIRNHQRGISVGSETPLYEVQTTQSDIIGARKLPHTPQYRFFDKAAVVITEGETHTHRSNRWRICTVTQVEELKSFIRVLPVWASTIALSVSFAQLSTFFISQANITDRRLGDSFKIPAGSVPVFSAVNALLLVPLYEKFIVPFLRNRYGHPRGITSLQRMGVGLFISIFAMASAALVEKKRREHYAQPFSMSVFWLLPQFFLMGSAEVFTYVGQLEFFYDEATDGTRSISSAMFLAEIGIGSWLSTALVKIVEGASGGQQRGWLRNDLNSSKLDYFYWILTGVNVINFLVYLAAARCFRGKGALAQVRDEDESMVKFNGVSL* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3547 577 ProSitePatterns PTR2 family proton/oligopeptide symporters signature 2. 183 195 IPR018456 GO:0006857|GO:0016020|GO:0022857
Lja1g3547 577 ProSitePatterns PTR2 family proton/oligopeptide symporters signature 1. 84 108 IPR018456 GO:0006857|GO:0016020|GO:0022857
Lja1g3547 577 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 8 564 IPR000109 GO:0016020|GO:0022857|GO:0055085
Lja1g3547 577 CDD MFS_NPF 31 551 - -
Lja1g3547 577 Pfam POT family 95 518 IPR000109 GO:0016020|GO:0022857|GO:0055085
Lja1g3547 577 Gene3D MFS general substrate transporter like domains 3 559 IPR036259 -
Lja1g3547 577 SUPERFAMILY MFS general substrate transporter 26 555 IPR036259 -
Lja1g3547 577 PANTHER PEPTIDE TRANSPORTER 8 564 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3547 Lja-Chr1 44177348 44180729 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3547 9 556 Organic Solute Cotransporters AT5G01180 48.741 0.0 548
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3547 K14638 - jre:108991324 850.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3547 1 44177348 44180729 Lja1g3547 1 44177348 44180729 ECH