Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3545 ATGGATGAGGAGAAAAGTGTGAGTAACGTAGAGACTTCAAAAGCTGAGAGATCGGTGTGGCTGATGAAGTGCCCTGTCGTGGTAGCTAAATCATGGCAGAATCATCACCCTTCTCCTTCACAACCTCTTTCCAAAGTCGTTCTTTCTCTTGATCCTCTCCTCCCCGAAGATGACCCTTCCCATCTCCAGTTTACAATGGAGATGACTGGCTCTGAAGCTGTTAATATGCCAAAAACTTATGCTTTGAATATGTTTAAAGACTTCGTTCCTATGTGCGTCTTCTCTGAAACAAGCCAAGGTGGCAAGGTTGCAATGGAAGGGAAAGTAGAACATAAGTTTGATATGAAGCCCCACGGTGAAAACATTGAAGAATATGGCAAATTGTGCCGCGAGAGGACAAACAAATCTATGATTAAAAATCGACAGATACAGGTTATTGATAATGATCGTGGAGTTCTAATGAGGCCAATGCCCGGAATGATTGGTCTAGTTTCATCCAATTCGAAGGACAAGAAGAGGACACAGCCAGTTAAGCAATCTGATACAAAGAGAACAAGAAGAGATCGTGGAGAGTTGGAGGATATAATGTTCAAGCTATTTGAAAGACAGCCTAACTGGGCCTTGAAGCAGCTTGTCCAAGAGACTGATCAACCTGCACAATTCTTGAAAGAGATCCTGAATGAATTGTGCGTGTACAATAAAAGAGGTGCCAACCAAGGAACTTACGAGCTGAAACCCGAATACAAGAAATCCGTTGAAGATGTGAAGGTTGAATAA 777 0.4247 MDEEKSVSNVETSKAERSVWLMKCPVVVAKSWQNHHPSPSQPLSKVVLSLDPLLPEDDPSHLQFTMEMTGSEAVNMPKTYALNMFKDFVPMCVFSETSQGGKVAMEGKVEHKFDMKPHGENIEEYGKLCRERTNKSMIKNRQIQVIDNDRGVLMRPMPGMIGLVSSNSKDKKRTQPVKQSDTKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGANQGTYELKPEYKKSVEDVKVE* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3545 258 PANTHER TRANSCRIPTION INITIATION FACTOR IIF, BETA SUBUNIT 4 254 - -
Lja1g3545 258 MobiDBLite consensus disorder prediction 163 188 - -
Lja1g3545 258 Gene3D - 184 251 IPR036388 -
Lja1g3545 258 SUPERFAMILY "Winged helix" DNA-binding domain 184 250 IPR036390 -
Lja1g3545 258 PANTHER GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 2 4 254 IPR003196 GO:0005674|GO:0006366|GO:0006367
Lja1g3545 258 Pfam TFIIF, beta subunit N-terminus 16 133 IPR040504 -
Lja1g3545 258 MobiDBLite consensus disorder prediction 171 188 - -
Lja1g3545 258 Pfam TFIIF, beta subunit HTH domain 186 249 IPR040450 -
Lja1g3545 258 SUPERFAMILY Rap30/74 interaction domains 9 118 IPR011039 GO:0006367
Lja1g3545 258 CDD TFIIF_beta 9 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3545 Lja-Chr1 44120599 44126920 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3545 K03139 - gmx:100788473 464.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3545 1 44120599 44126920 Lja1g3545 1 44120599 44126920 ECH