Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3540 ATGGCAGCTCAAGATCCTAAACCCGAGATTGCGCTTGTCATAGACAACACAGTCTCCACCATTATTTCCCGCGAACCACCCTCGTTTATAGTTGCGAGGCGCTTGTTAGCGTCCCTAAACTCTGTACTAACAAAATTGCATGCAGGTTATTTCAGAATAAGTCTCTCCCTCGGTGGCCAAGCTTTGTTATGGAAGACACTAATCGGACCAACACACGACAAAAGCACCCTGCGACACGTGGTTCACATGGTTCCTTCCTCCGCTTTCCTCGTACTATGGTCTCTGGCTCTCTTCACACTCGCATTGCTCTCTCTTCTCTACCTTCTAAGGTGCTTGTTTCACTTCAATATGGTAAAGGCAGAGTTCTTGCACCATGTCGGGGTTAACTACCTCTTCGCTCCGTGGATCTCGTGGTTTCTCTTACTCCAATCCGCGCCATTCGTGGCGCCGAAAACGGCCACCTATTTGGTTCTTTGGTGGGTGTTTGCGGTGCCGGTTGTGGTGCTGGACGTGAAAATCTACGGTCAGTGGTTCACGAAAGGGAAGAGGTTTCTGTCCACCGCGGCAAACCCAACAAGCCAGTTGTCAGTGATAGGCAACTTGGTGGGGGCGCAAGCCGCGGCGCACATGGGTTGGAAAGAGAGTGCGGTGTGCTTATTCTCGCTAGGGATGGTGCATTACTTGGTGTTGTTTGTCACGCTTTATCAGCGGTTGTCTGGTGGAAATCGCCTTCCGGTGTTGTTGAGGCCGGTTTTCTTCTTGTTCTTTGCGGCGCCCGGCGTGGCGAGCTTGGCTTGGGGATCCATTGTTGGAGGCTTTGATACCCTTTCCAAGATGCTCTTCTTTCTGTCGCTTTTCCTCTTCATGTCACTGGTTTGCAGGCCAACATTGTTCAGGAGATCTATGAAAAGGTTCAACGTTGCATGGTGGGCTTACTCCTTTCCGGTTACCGTTCTGGCGATGGCTTCCACGGACTATGCCGAAGAAGTCAAAGGAACAATATCTCACGTGCTAATGCTTGTTCTCTTGGCACTTTCTGTTCTGGTCTCCCTTGCTCTAACGGTGTTCACTTTTATCAACTCTAAGATGCTACTGCCGGATGATGATCCCATTGCCACCTTCCTTATTGTTTAA 1134 0.5009 MAAQDPKPEIALVIDNTVSTIISREPPSFIVARRLLASLNSVLTKLHAGYFRISLSLGGQALLWKTLIGPTHDKSTLRHVVHMVPSSAFLVLWSLALFTLALLSLLYLLRCLFHFNMVKAEFLHHVGVNYLFAPWISWFLLLQSAPFVAPKTATYLVLWWVFAVPVVVLDVKIYGQWFTKGKRFLSTAANPTSQLSVIGNLVGAQAAAHMGWKESAVCLFSLGMVHYLVLFVTLYQRLSGGNRLPVLLRPVFFLFFAAPGVASLAWGSIVGGFDTLSKMLFFLSLFLFMSLVCRPTLFRRSMKRFNVAWWAYSFPVTVLAMASTDYAEEVKGTISHVLMLVLLALSVLVSLALTVFTFINSKMLLPDDDPIATFLIV* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3540 377 CDD TDT_SLAC1_like 46 333 - -
Lja1g3540 377 Gene3D - 40 365 IPR038665 -
Lja1g3540 377 PANTHER OS11G0274300 PROTEIN 5 374 - -
Lja1g3540 377 Pfam Voltage-dependent anion channel 46 357 IPR004695 GO:0016021|GO:0055085
Lja1g3540 377 PANTHER - 5 374 IPR030183 GO:0006873|GO:0008308|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3540 Lja-Chr1 44083370 44086140 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3540 - - gmx:100787036 508.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3540 1 44083370 44086140 Lja1g3540 1 44083370 44086140 ECH