Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3538 ATGGGAGCTCTTCCCACCGTTTTCCCGTGGACTCGTGAGGACGATTTTCTCCTCAAAAACGCCGTTGAGTCTGGTGCTTCCTTGGAATCACTGGCGAAAGGCGCAGTGAAGTTTTCTCGAAGATATAGTATTAAAGAAATACAAGATAGATGGTATTCTATCCTCTATGATCCTGTTGTATCTGCGGAATCTGCTGCAACCATGGCAGACTTTGAGACTCGTGCGACGCCTCTCCCGTCAAGGTTTTTTAATTTTGGGCATTCGAAAGGACGTAAATCTGTTTCTGTAAGGAGTAAATGTAAAAGTGTCCGTTCTTCTTATTATGCCATGCGGAAGAGGTTACGCAAGGACTCGGCAACTTCCATGGACTTCAATTTTCTAGTTGATCCGGAAAATGGCGATTACGGGCTGAACGGAAGCGAGCCTTTGCCTGAAAATAGCATACCCGATGGTGCAACTTCGAATCACTTTTCAGATCTTGATCCGGCGCAATGCGTTTTTCCTGAAAATATGATTGATGGTAATGATGCAATTGATGGAGATACTGATCGTGTGGTTTACCCTGGAGCTGACCATGCAGTTGAAGACAATCTTCCCATTGAGCAAAATAGTATACTTGAGGAAGGATTGCAAATTCGTGGTGATGATGTGTCTTTGAATGGAGCTGCTGAGGAATTGGGGGTTCCAGAAAATATGGATGTAGATAACTTGATTGGAGATGATAATATGCGTTTATCTGCATTGGATCATGTCGACAATGATCATGAAAATTTGTGTTCTGCGTTTTATGAAAATAATCTGTTTGATTCACCTGAGTTAGAGTGTGGGACATCATTTAACGCCTTACCATTATCTCCGCTGCCTGAAGTGCCTGAAATGACTGAATTATGGAGAACAGATGAGAACATTCCAGTAGTTAATTTTCAGTATGATGGTGGTTTAAAAGATTCTGTTGCTTGCGGTCTGGCTGACCTGTCTAATGAACTGGAATTTGATGATGATGAACTGTTTTTGATGAATGGTGATAGAAAAGATGGGATTGATAAGGCTTACTATGATGATTTAAGTTTGCTCTTGCGATATCCTCCAATGGATGTTAGTCCAGATCAGGTACCTGAAAAGGCTGAAACAGAGTTGTTATTGGACTCACATGCCCATGTTGCAGATCTTTCAGTTCCATGCCATGCAAAAGTAGATGATAACTCGGAGTCGCAATGCAGTAGTGTGCAAGTAGTTCACAAAATAGAGTTCCAAATGCCACCTTCTGCCTCAGCTAAAGATCCTCATTTTCCTGAACTAGTTAACGGAGTTATTAACTGTGTACTGAATACTGAGGACCCAGAAGTTCCATCCAATGATGACGTTTTCCTACCCTTTGATGTGCCTCAGTCAACATTTTCTCATTCACATAAATCAAAATCTAGAGAATTCAGTAAATCAATTCCGTCAACTTCTCATGATTATGGATTTAGTAATCATAGAGCTAGTGAAAGAGGTAAAACTTTGATGCAGGTTGAACAAAAAAACTCCAGACAGCCTTCTCAGATGATGGGATCTCAACTCCCAGGGCCTGTTTGTGGTTCTAAGGTAAAATGTGAGTTGCCCTATGGTCATGCATCACACACAGTGTCTAGGAGTGCAGTTATTGTTTCTGGTGGCTTAGTTGGAAACAATAATGCTGCAAACACAACCAATGCTCCTCTGCATGAAAATACAAAGGAAGAGCCTACCAAGGTTGGCTTGGCAAAGCATCTGAGCAATTGTGCGACAAATTCTTTGATTGAGAAACCAGGCGTTGGTTCTAATGACTTGAGGAACCATCCTAAACCTAATGGTTCTAGCATACAACAGGAACAAGATGTAGCCTTGTCACTTGAAAATCATCAATTGCAACATACTGAAATGGGATCCTCAGATGTTCCTGAGGAGGACGAGGATTCTATAGAAAGTGATGATGATGTTCCTTATTATTCTGATATAGAGGCAATGGTACTTGATATGGACTTGGATCCTGATGATCAGGATTTGTATTATAATGAGGAAGTATCAAGTTATCAGCATGAGGAAACTAAGCAAGCTATCGTAAGGCTGGAACAGGGTGCTGATTCTATTACGCAGAGGGCCATTGCTTCACATGGAGCATTTGCTATTTTATATGGTCGCCGCTCAAAGCATTATATTAAGAAAGCCGAGGTTTTACTTGGACGAGCAGCAGAAGGTGTTCCTGTGGACATTGACTTGAGCAGAGAAGGGAATGCCAATACAATATCTCGACGTCAGGCAATTATAAAGATGGACAAAGATGGATCTTTCTACATTAAAAACTTGGGCAGGAGTTCAATCCTTGTAAATAACAAAGAAGTGCGCACTGGTCAGTGTCAAAGACTGCATTCCGATTATCTGATTGAGTTGAAGAGCATGCCATTCATATTTGAGACAAATGAAAGTTGTGTGAAGCAGTTCCTGGAGCATATGACTGACAATGGAGTGTAA 2493 0.4132 MGALPTVFPWTREDDFLLKNAVESGASLESLAKGAVKFSRRYSIKEIQDRWYSILYDPVVSAESAATMADFETRATPLPSRFFNFGHSKGRKSVSVRSKCKSVRSSYYAMRKRLRKDSATSMDFNFLVDPENGDYGLNGSEPLPENSIPDGATSNHFSDLDPAQCVFPENMIDGNDAIDGDTDRVVYPGADHAVEDNLPIEQNSILEEGLQIRGDDVSLNGAAEELGVPENMDVDNLIGDDNMRLSALDHVDNDHENLCSAFYENNLFDSPELECGTSFNALPLSPLPEVPEMTELWRTDENIPVVNFQYDGGLKDSVACGLADLSNELEFDDDELFLMNGDRKDGIDKAYYDDLSLLLRYPPMDVSPDQVPEKAETELLLDSHAHVADLSVPCHAKVDDNSESQCSSVQVVHKIEFQMPPSASAKDPHFPELVNGVINCVLNTEDPEVPSNDDVFLPFDVPQSTFSHSHKSKSREFSKSIPSTSHDYGFSNHRASERGKTLMQVEQKNSRQPSQMMGSQLPGPVCGSKVKCELPYGHASHTVSRSAVIVSGGLVGNNNAANTTNAPLHENTKEEPTKVGLAKHLSNCATNSLIEKPGVGSNDLRNHPKPNGSSIQQEQDVALSLENHQLQHTEMGSSDVPEEDEDSIESDDDVPYYSDIEAMVLDMDLDPDDQDLYYNEEVSSYQHEETKQAIVRLEQGADSITQRAIASHGAFAILYGRRSKHYIKKAEVLLGRAAEGVPVDIDLSREGNANTISRRQAIIKMDKDGSFYIKNLGRSSILVNNKEVRTGQCQRLHSDYLIELKSMPFIFETNESCVKQFLEHMTDNGV* 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3538 830 Pfam FHA domain 733 804 IPR000253 GO:0005515
Lja1g3538 830 ProSiteProfiles Forkhead-associated (FHA) domain profile. 732 788 IPR000253 GO:0005515
Lja1g3538 830 PANTHER MICROSPHERULE PROTEIN 1 1 827 IPR037912 GO:0002151|GO:0031011|GO:0071339
Lja1g3538 830 MobiDBLite consensus disorder prediction 632 653 - -
Lja1g3538 830 MobiDBLite consensus disorder prediction 502 521 - -
Lja1g3538 830 PANTHER FHA DOMAIN PROTEIN 1 827 - -
Lja1g3538 830 SUPERFAMILY SMAD/FHA domain 709 814 IPR008984 GO:0005515
Lja1g3538 830 CDD FHA 720 813 IPR000253 GO:0005515
Lja1g3538 830 Pfam N-terminal region of micro-spherule protein 10 72 IPR025999 -
Lja1g3538 830 SMART FHA_2 731 788 IPR000253 GO:0005515
Lja1g3538 830 MobiDBLite consensus disorder prediction 592 619 - -
Lja1g3538 830 Gene3D - 673 826 - -
Lja1g3538 830 MobiDBLite consensus disorder prediction 639 653 - -
Lja1g3538 830 MobiDBLite consensus disorder prediction 465 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3538 Lja-Chr1 44050183 44055538 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3538 - - aprc:113865691 933.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3538 1 44050183 44055538 Lja1g3538 1 44050183 44055538 ECH