Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3528 ATGAGCAAAAGACCACCACCTGATCCCGTGGCAGTGCTACGAGGCCACCGTGCTTCCGTCACGGACATTTGTTTTCACCCCTTTAAGCCCATCCTATTCTCCGGTTCTGTTGATGGTGAACTGCGGATTTGGGATACCCTTAAGTATCAAACAGTGTCATCAGCATGGTTACATAGTGCTGCCCATGGGATTGTTGCTGTTGCCAGTAGTTCTTTGCTCGGAACCAATAAATTTGTCAGCCAGGGTAGGGATGGAACTGTGAAAGTATGGGATTTTGATGAAGCTGGTTTGTCCAGGAATCCATTACTTACAATCAAGACAAACACTTACCACTTTTGCAAATTTTCCTTAGTTAAGAATCATCGCCCTTTGTTGAAAGAGGGGGAAGCATCAAACAGTTGCCTTAGAACAGAGCTAGGTGGAATGTCTGATAAAGAAAATCTGGAGTTTAAGAGTGAAGAGGCTTCTACAGATCAAAGTTGTTCTGACAGCTTTGGAGAAAATTCGTATGGTGAAGGGCCACTATATGTGGCTTTGTCAGGGGAGAATTCTTCTGAGGTTGAAATTTGGGATCTCAAGTCAGCTGAAAGATTTGTAAGACTTCCTACAAAAAATCCTAATGACTCTTCAAGTGCTTGCAACAAAGATAGAGGGATGTGCATGGCACTTCAATTATTTTCACCATCTGAATCGCAAGGATTTTTGAATGTCTTGGCTGGATATGAGGACGGTTCCATGCTTTGGTGGGATGTACGAAATCCTGGAGTTCCAGTACGTTCAGTAAAATTTCATTCTGAGCCAGTTCTAAGCGTCTGTATTGAAGGGTCTTGCAAGGGGGGTATCTCAGGAGCTGCAGATGAGAAGATTGTAATGTACAGCTTGGATCATTCTTTGGGTACATGTGTGGTCAATAAAGAAATCAAATTGGAGCGACCGGGCATCTCAGGCACCTCAATTCGGCCTGATGGAAAAATTGCTGCAACTGCTGGCTGGGACCACAGAGTAAGGATATATAATTACCGCAAAGGAAATGCTTTGGCTATACTGAAATATCATCATGCCACGTGTAATGCTGTTACTTTCTCATCTGATTGTAAGCTTATGGCCTCTGCATCAGAAGACACGACTGTGGCATTGTGGGAACTATATCCTCCTCGACAATGA 1164 0.4364 MSKRPPPDPVAVLRGHRASVTDICFHPFKPILFSGSVDGELRIWDTLKYQTVSSAWLHSAAHGIVAVASSSLLGTNKFVSQGRDGTVKVWDFDEAGLSRNPLLTIKTNTYHFCKFSLVKNHRPLLKEGEASNSCLRTELGGMSDKENLEFKSEEASTDQSCSDSFGENSYGEGPLYVALSGENSSEVEIWDLKSAERFVRLPTKNPNDSSSACNKDRGMCMALQLFSPSESQGFLNVLAGYEDGSMLWWDVRNPGVPVRSVKFHSEPVLSVCIEGSCKGGISGAADEKIVMYSLDHSLGTCVVNKEIKLERPGISGTSIRPDGKIAATAGWDHRVRIYNYRKGNALAILKYHHATCNAVTFSSDCKLMASASEDTTVALWELYPPRQ* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3528 387 PANTHER TRANSDUCIN BETA-LIKE 3 3 386 - -
Lja1g3528 387 ProSiteProfiles Trp-Asp (WD) repeats profile. 13 54 IPR001680 GO:0005515
Lja1g3528 387 PANTHER - 3 386 - -
Lja1g3528 387 Pfam WD domain, G-beta repeat 346 380 IPR001680 GO:0005515
Lja1g3528 387 Pfam WD domain, G-beta repeat 9 45 IPR001680 GO:0005515
Lja1g3528 387 Pfam WD domain, G-beta repeat 318 339 IPR001680 GO:0005515
Lja1g3528 387 ProSiteProfiles Trp-Asp (WD) repeats profile. 349 387 IPR001680 GO:0005515
Lja1g3528 387 Gene3D - 2 126 IPR015943 GO:0005515
Lja1g3528 387 ProSitePatterns Trp-Asp (WD) repeats signature. 368 382 IPR019775 -
Lja1g3528 387 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 349 387 - -
Lja1g3528 387 ProSiteProfiles Trp-Asp (WD) repeats profile. 78 100 IPR001680 GO:0005515
Lja1g3528 387 SMART WD40_4 300 339 IPR001680 GO:0005515
Lja1g3528 387 SMART WD40_4 342 381 IPR001680 GO:0005515
Lja1g3528 387 SMART WD40_4 50 91 IPR001680 GO:0005515
Lja1g3528 387 SMART WD40_4 254 293 IPR001680 GO:0005515
Lja1g3528 387 SMART WD40_4 6 45 IPR001680 GO:0005515
Lja1g3528 387 Gene3D - 308 386 IPR015943 GO:0005515
Lja1g3528 387 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 13 45 - -
Lja1g3528 387 Gene3D - 151 307 IPR015943 GO:0005515
Lja1g3528 387 SUPERFAMILY WD40 repeat-like 4 381 IPR036322 GO:0005515
Lja1g3528 387 PRINTS G protein beta WD-40 repeat signature 368 382 IPR020472 -
Lja1g3528 387 PRINTS G protein beta WD-40 repeat signature 78 92 IPR020472 -
Lja1g3528 387 PRINTS G protein beta WD-40 repeat signature 32 46 IPR020472 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3528 10 97 Miscellaneous Gene Families AT5G08390 32.955 8.72e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3528 K24770 - gmx:100800482 652.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3528 1 43975320 43981387 Lja1g3528 1 43975320 43981387 ECH