Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3524 ATGTCTGCTTCCGAATCGGAGAAGAAGGTTGAGGAGGAGGAAGAGAACCAGGAAGTTCTCAAAGGCGGTGAGCTCTTGTTCTGCGGTGCCACGTGTTGGGATATCGTTGGTCGTCGGAAGGGTCCCGTCGACGGTAACTTGGTCTCTCCCACGCGCCTCCGTCCTCTCGTTGGGATTGATATTCGCTACGTCGCTGCCGGCTGCGCTTCTTGTCATTGTGTGGCATTGGATGTTGATGGGCGTTGCTATACTTGGGGCCGTAATGAGAAGGGGCAACTGGGTCATGGAGATACCATTCAGCGTGATAGGCCAACTGTGGTGTCTGAACTTTCCAAATACAAAGTTGTCCAAGCTGGAGCTGGGAGGAGCCATACAGTAGTTATCACAGATGATGGGAACTCCCTGGCCTTTGGATGGAACAAACATGGACAGCTTGGTTCTGGCTCTGCGAAAAATGAAGTTGAGACATCTCCTGTTCGCTGTCTTGTGTCTGAAGTAACGTATACTACTTGTGGGGGTGACTTCACAGTGTGGTTATCTTCCGTTGAAGGAGCTTCTATATTAACTGCTGGGCTTCCACAGTACGGGCAGCTTGGGCATGGAACAGATAATGAGTATAATTTGAAAGACAGCTCTGTGAAATTGGTTTACGAAGCCCAACCACGTCCTCGAGCAATAGCTTCTCTTGCTGGGGAAACCATCGTCAAAGTTGCATGTGGAACAAATCACACAGTGGCGGTGGATAAGAATGGCTATGTCTACACGTGGGGTTTTGGTGGTTATGGAAGGCTAGGACATCGGGAGCAGAAGGACGAATGGGCCCCACGCCGTGTTGATCTTTTCCAGAATAGAAATGTTTTGCCTGCTGATGCAATTATTTCAGCTGGTTCTGTGAATTCTTCATGTACTGCAGCTGGAGGGCAGTTGTACATGTGGGGCAAAATAAAGAGCACCGGTGATGACTGGATGTATCCTAAGCCTGTCATGGATTTAAGTGGTTGGAATATACGATGCATGGATTCAGGCAGTATGCACCATTTTGTCGGGGCTGATTCCTCGTGCATAAGTTGGGGTCATGCTCAGAATGGTGAGCTGGGATATGGACCAACTGGGCAGAAGTCTTCTGCTGTACCTAAAAAGGTGGACATACTTGAGGGTATGCATGTAATAAGTGTAGCTTGTGGTATGGGCCATTCCATGGTTGTTGTTGATAGAGCAAATGTTGCTGATAGACTTGACCAGCTTGATACATATGATGGGAAAGCTTTTGGTGAAGTTAATGAGATTGTAAAGGAAAGTCCAGCGCCGAAGAAGGCTGCGAAAAAGGGTGCAAAGAAGGGAGCTGACAATTCTAAGAAGAGGAAAAAAGCAAAAGAACCATCTGACTCAGAGGAGGAAGAGGAAGAGGATGCTGAAGAAAGTGACAATAGTGAGGATGAAGTTAATGGTGAGGCTGAGGTAAAAAGGTCTCGTGGTGGAAAAACTTCCGGTAAAGGCCGAGGTAAGGCGCCCAAAAAGTCAGGGGCCGAGGTTAAAGGTTCTGGCAGAGGACGTGGTGGCGCTGCCGCCGCTGCAAACAAGAGTGGTTCTTCCGGTAAGAGAGGAAGACCTCGCAAGTCGTCATGA 1626 0.4871 MSASESEKKVEEEEENQEVLKGGELLFCGATCWDIVGRRKGPVDGNLVSPTRLRPLVGIDIRYVAAGCASCHCVALDVDGRCYTWGRNEKGQLGHGDTIQRDRPTVVSELSKYKVVQAGAGRSHTVVITDDGNSLAFGWNKHGQLGSGSAKNEVETSPVRCLVSEVTYTTCGGDFTVWLSSVEGASILTAGLPQYGQLGHGTDNEYNLKDSSVKLVYEAQPRPRAIASLAGETIVKVACGTNHTVAVDKNGYVYTWGFGGYGRLGHREQKDEWAPRRVDLFQNRNVLPADAIISAGSVNSSCTAAGGQLYMWGKIKSTGDDWMYPKPVMDLSGWNIRCMDSGSMHHFVGADSSCISWGHAQNGELGYGPTGQKSSAVPKKVDILEGMHVISVACGMGHSMVVVDRANVADRLDQLDTYDGKAFGEVNEIVKESPAPKKAAKKGAKKGADNSKKRKKAKEPSDSEEEEEEDAEESDNSEDEVNGEAEVKRSRGGKTSGKGRGKAPKKSGAEVKGSGRGRGGAAAAANKSGSSGKRGRPRKSS* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3524 541 Gene3D - 164 410 IPR009091 -
Lja1g3524 541 PRINTS Chromosome condensation regulator RCC1 signature 115 128 IPR000408 -
Lja1g3524 541 PRINTS Chromosome condensation regulator RCC1 signature 81 97 IPR000408 -
Lja1g3524 541 PRINTS Chromosome condensation regulator RCC1 signature 134 150 IPR000408 -
Lja1g3524 541 PRINTS Chromosome condensation regulator RCC1 signature 253 267 IPR000408 -
Lja1g3524 541 PRINTS Chromosome condensation regulator RCC1 signature 237 253 IPR000408 -
Lja1g3524 541 Gene3D - 6 161 IPR009091 -
Lja1g3524 541 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 237 247 IPR000408 -
Lja1g3524 541 Pfam Regulator of chromosome condensation (RCC1) repeat 356 402 IPR000408 -
Lja1g3524 541 Pfam Regulator of chromosome condensation (RCC1) repeat 250 288 IPR000408 -
Lja1g3524 541 Pfam Regulator of chromosome condensation (RCC1) repeat 79 128 IPR000408 -
Lja1g3524 541 Pfam Regulator of chromosome condensation (RCC1) repeat 188 247 IPR000408 -
Lja1g3524 541 Pfam Regulator of chromosome condensation (RCC1) repeat 131 177 IPR000408 -
Lja1g3524 541 MobiDBLite consensus disorder prediction 463 480 - -
Lja1g3524 541 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 118 128 IPR000408 -
Lja1g3524 541 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 132 182 IPR000408 -
Lja1g3524 541 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 251 306 IPR000408 -
Lja1g3524 541 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 352 405 IPR000408 -
Lja1g3524 541 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 80 131 IPR000408 -
Lja1g3524 541 PANTHER PROTEIN RCC2 4 527 IPR028641 -
Lja1g3524 541 MobiDBLite consensus disorder prediction 433 541 - -
Lja1g3524 541 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 185 250 IPR000408 -
Lja1g3524 541 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 392 402 IPR000408 -
Lja1g3524 541 SUPERFAMILY RCC1/BLIP-II 19 405 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3524 Lja-Chr1 43927160 43933976 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3524 - - gmx:100819842 854.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3524 1 43927160 43933976 Lja1g3524 1 43927160 43933976 ECH