Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3509 ATGGGGCAGAAATCGAGGTCCAAAGGGTGCTGCGGTTGGTTTGTGGCGGTTCTGATTCTGGCTCTCGTCATCGGCGCCATCGCTTACACCATTAAGAAGAAGTTTGGTCACTCTGACTCCGATAACCCAGCTCCGGTTCCTGGTCCACCCGGCGCCATTGACCACAAATATTCCTCTGCACTCAAAACTGCAATGCAATTCTTCGATATACAAAAATCTGGCAAGTTAGTTAACAACAAAATAAGTTGGAGAGGGGATTCAGCTCTAAAGGATGGAAGCCAAGCGAAACTGGATCTATCAAAAGGAATGTATGATGCTGGGGATCACATGAAGTTTGGTTTTCCCATGGCTTTTACTGCCACGGTGTTATCATGGGCCATTCTGGAATATGGAGATCAAATGGACGCTGTTGGCCAGTTGGATCCGGCACAAGATTCGCTGAAATGGATCACTGATTTTCTTATCAACGCTCACCCTTCTGAAAATGTTCTTTATATTCAGGTGGGTGATCCTGTTGCAGATCATAAGTGTTGGGATAGACCTGAAGATATGACGGAGGAGCGGCCACTCACGCAAGTGAACGCGTCTTGTGCCGGATCAGACGTTGCAGCTGAAACTGCAGCAGCCATGGCATCAGCATCGTTGGTCTTTAAAAAGACTAATTCTACTTATTCAAGCACTCTTCTCAAGCATGCAAAACAGTTGTTTACGTTTGCGGACAAGAATAGAGGATCTTATAGTGAGAATATACCTGAAGTCGCAACGTATTATAACTCAACTGGATATGGTGATGAGCTCTTATGGGCTGCTAGTTGGCTGTATCATGCCACAAATGATGATTCTTACCTTGACTTTGTGGTTGGCCAAGATGGAGAAGACTATGCTCAATTCGGAAGCCCAACCTGGTTCAGTTGGGACAACAAGCTTGCCGGAACTCAGGTTTTGTTATCCAGATTAAGCTTCTTTAAGAAGGACCTTTCAAATTCACATGGCTCTGGCCTGCAAAGTTACAGGAAAACTGCTGAGGCTGTGATGTGTGGCCTTCTTCCAGAATCTCCAACAGCCACAAAAAGCAGAACAGATAATGGTCTTATATGGGTGAGCGACTGGAACTCTCTACAGCAACCTGTTGCTTCTGCATTCTTAGCTGCTATTTACAGCGACTATATGCTTACATCGCGGACTCCGAAACTAAAATGTGATTCAGATTCCTATACCCCAGCAGATCTTCGGGACTTTGCCAAATCCCAGGCTGATTATGTATTGGGCAAGAATCCTATGGATATGAGTTTTCTGGTGGGATATGGAGATAAGTTCCCACAATTCGTGCACCATAGGGGGGCTTCAATCCCTGCTAACGCGAAAACCGGTTGCAAGGACGGCTTCAAGTGGCTTGATTCGACTGATCCCAATCCCAACGTAGCTACTGGAGCACTTGTTGGTGGACCCTTCTTGAATGACACTTACATTGATTCCCGGAACAATTCCATGCAAGCAGAACCAAGCACATATAACAGTGCTGTCTTAGTTGGCCTTCTATCCAGCTTGGTCACAACATCTTCTGCCCTTCAGTCCTTTACCTAA 1584 0.4583 MGQKSRSKGCCGWFVAVLILALVIGAIAYTIKKKFGHSDSDNPAPVPGPPGAIDHKYSSALKTAMQFFDIQKSGKLVNNKISWRGDSALKDGSQAKLDLSKGMYDAGDHMKFGFPMAFTATVLSWAILEYGDQMDAVGQLDPAQDSLKWITDFLINAHPSENVLYIQVGDPVADHKCWDRPEDMTEERPLTQVNASCAGSDVAAETAAAMASASLVFKKTNSTYSSTLLKHAKQLFTFADKNRGSYSENIPEVATYYNSTGYGDELLWAASWLYHATNDDSYLDFVVGQDGEDYAQFGSPTWFSWDNKLAGTQVLLSRLSFFKKDLSNSHGSGLQSYRKTAEAVMCGLLPESPTATKSRTDNGLIWVSDWNSLQQPVASAFLAAIYSDYMLTSRTPKLKCDSDSYTPADLRDFAKSQADYVLGKNPMDMSFLVGYGDKFPQFVHHRGASIPANAKTGCKDGFKWLDSTDPNPNVATGALVGGPFLNDTYIDSRNNSMQAEPSTYNSAVLVGLLSSLVTTSSALQSFT* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3509 527 Pfam Glycosyl hydrolase family 9 57 513 IPR001701 GO:0004553|GO:0005975
Lja1g3509 527 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 420 446 IPR018221 -
Lja1g3509 527 Gene3D - 53 520 IPR012341 GO:0005975
Lja1g3509 527 SUPERFAMILY Six-hairpin glycosidases 54 519 IPR008928 GO:0005975
Lja1g3509 527 PANTHER ENDO-1,4-BETA-GLUCANASE 7 527 - -
Lja1g3509 527 PANTHER ENDOGLUCANASE 2 7 527 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3509 Lja-Chr1 43748970 43753455 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3509 1 526 Glycoside Hydrolase AT1G75680 71.347 0.0 734
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3509 - - gmx:100812226 954.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3509 1 43748970 43753455 Lja1g3509 1 43748970 43753455 ECH