Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3500 ATGAAGGCAACCAAGAGACCGATCCACGCCCTGACCACATGGGTTCGGCGGCAGCCGCCCAAGATGAAGGCCTTTCTGGCGGTGGTTGCCGGCCTCGCAACCTTGCTCTTCCTCAGAATGGTGGTTCACGACCACGACAACCTCTTCATCGCAGCTGAGTTTGTTCACGCATTAGGAATTTCCCTCCTCATTTTCAAACTCACCAAGGAAAAAACTTGTGCTGGACTCTCACTTAAATCACAGGAACTGACGGCTATGTTTCTAGCTGTTAGACTTTACTGCAGTTTTGTCATGGAATATGATATACACACCATACTCGACACGGCAACACTGGTGACGACCCTCTGGGTTATTTATATGATGCGCTTCAAACTGAAATCCAGTTATATGGATGATAAGGACAACCTTCCAATATACTATGTGGTGATGCCTTGTGCTGCGCTCTCCTTGCTTATTCATCCAAATACCCGCCATAATCCAATTAACAGGATTCTCTGGGGCTTTTGTGTTTACCTTGAAGCTGTATCAGTTCTCCCTCAGCTGAGGGTCATGCAGAACGCTAAGATTGTTGAACCATTCACAGGACACTACGTTTTTGCCCTTGGAGTTGCAAGGTTCTTGAGTTGTGCACATTGGGTCCTCCAGGTATTAGATACTCGCGGCCGTCTACTAACTGCTTTGGGTTATGGATTGTGGCCTTCTATGGTACTTCTATCAGAAATTGTCCAAACTTTCATCCTGGCTGATTTTTGCTACTACTACGTCAAGAGCATCTTTGGCGGACAACTTGTTGTAAGGCTTCCTTCAGGAGTGGTGTAA 819 0.4664 MKATKRPIHALTTWVRRQPPKMKAFLAVVAGLATLLFLRMVVHDHDNLFIAAEFVHALGISLLIFKLTKEKTCAGLSLKSQELTAMFLAVRLYCSFVMEYDIHTILDTATLVTTLWVIYMMRFKLKSSYMDDKDNLPIYYVVMPCAALSLLIHPNTRHNPINRILWGFCVYLEAVSVLPQLRVMQNAKIVEPFTGHYVFALGVARFLSCAHWVLQVLDTRGRLLTALGYGLWPSMVLLSEIVQTFILADFCYYYVKSIFGGQLVVRLPSGVV* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3500 272 PRINTS ER lumen protein retaining receptor signature 48 67 IPR000133 GO:0006621|GO:0016021|GO:0046923
Lja1g3500 272 PRINTS ER lumen protein retaining receptor signature 75 95 IPR000133 GO:0006621|GO:0016021|GO:0046923
Lja1g3500 272 PRINTS ER lumen protein retaining receptor signature 166 186 IPR000133 GO:0006621|GO:0016021|GO:0046923
Lja1g3500 272 PRINTS ER lumen protein retaining receptor signature 188 202 IPR000133 GO:0006621|GO:0016021|GO:0046923
Lja1g3500 272 PRINTS ER lumen protein retaining receptor signature 202 220 IPR000133 GO:0006621|GO:0016021|GO:0046923
Lja1g3500 272 PANTHER ER LUMEN PROTEIN RETAINING RECEPTOR-LIKE PROTEIN 1 271 - -
Lja1g3500 272 PANTHER ER LUMEN PROTEIN RETAINING RECEPTOR 1 271 IPR000133 GO:0006621|GO:0016021|GO:0046923
Lja1g3500 272 Pfam ER lumen protein retaining receptor 72 214 IPR000133 GO:0006621|GO:0016021|GO:0046923
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3500 Lja-Chr1 43611711 43616672 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3500 1 272 Miscellaneous Gene Families AT4G38790 80.952 1.80e-169 468
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3500 - K10949 gmx:100787747 499.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3500 1 43611711 43616672 Lja1g3500 1 43611711 43616672 ECH