Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3491 ATGAGTGCGTCCAAGTTCATCAAGTGCGTCACCGTCGGCGACGGTGCCGTCGGCAAAACCTGCTTGTTGATTTCCTACACCAGCAACACTTTCCCCACGGACTACGTACCCACTGTTTTTGACAATTTCAGTGCTAATGTTGTTGTTGATGGAAGCACTGTGAACCTTGGACTATGGGATACTGCTGGTCAGGAGGATTATAATAGACTAAGACCCTTGAGCTATCGAGGAGCTGATGTCTTTATACTTGCCTTTTCTCTCATAAGCAGGGCCAGCTACGAAAATATCGCCAAGAAGTGGATCCCTGAACTAAGGCATTATGCGCCTGGCGTTCCAATAATTCTAGTTGGGACAAAGTTAGATCTTCGGGATGATAAGCAATTTTTTATCAACCACCCTGGTGCGGTGCCAATTACCACAGCACAAGGTGAAGAATTGAGAAAGCTGATTGGTGCTCCTGCCTATATCGAGTGCAGTTCAAAAACGCAGCAGAATGTTAAAGCTGTCTTTGATGCTGCCATCAAAGTTGTTCTTCAACCACCGAAGCAGAAGAAAAACAAGAGGAAGGCACAGAAGGCTTGCTCAATATTGTGA 594 0.4579 MSASKFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRASYENIAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFINHPGAVPITTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKVVLQPPKQKKNKRKAQKACSIL* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3491 197 TIGRFAM small_GTP: small GTP-binding protein domain 5 171 IPR005225 GO:0005525
Lja1g3491 197 CDD Rop_like 6 178 - -
Lja1g3491 197 SMART ras_sub_4 4 180 - -
Lja1g3491 197 PANTHER RHO FAMILY GTPASE 1 197 IPR003578 GO:0005525|GO:0007264
Lja1g3491 197 SMART rho_sub_3 9 180 IPR001806 GO:0003924|GO:0005525
Lja1g3491 197 Pfam Ras family 8 178 IPR001806 GO:0003924|GO:0005525
Lja1g3491 197 ProSiteProfiles small GTPase Rab1 family profile. 2 197 - -
Lja1g3491 197 SMART rab_sub_5 7 180 - -
Lja1g3491 197 ProSiteProfiles small GTPase Rho family profile. 1 177 - -
Lja1g3491 197 ProSiteProfiles small GTPase Ras family profile. 2 197 IPR001806 GO:0003924|GO:0005525
Lja1g3491 197 PANTHER RAC-LIKE GTP-BINDING PROTEIN ARAC11 1 197 - -
Lja1g3491 197 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 178 IPR027417 -
Lja1g3491 197 Gene3D - 5 192 IPR027417 -
Lja1g3491 197 PRINTS Transforming protein P21 ras signature 30 46 - -
Lja1g3491 197 PRINTS Transforming protein P21 ras signature 155 177 - -
Lja1g3491 197 PRINTS Transforming protein P21 ras signature 7 28 - -
Lja1g3491 197 PRINTS Transforming protein P21 ras signature 47 69 - -
Lja1g3491 197 PRINTS Transforming protein P21 ras signature 109 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3491 Lja-Chr1 43496935 43499248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3491 5 180 EF-hand Containing Proteins AT5G27540 27.273 1.80e-17 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3491 K04392 - zju:107420406 372.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3491 1 43496935 43499248 Lja2g0573 2 5150584 5152554 ECH
Lja1g3491 1 43496935 43499248 Lja4g3109 4 58838122 58843488 ECH
Lja1g3491 1 43496935 43499248 Lja1g2382 1 27532885 27535073 ECH
Lja1g3491 1 43496935 43499248 Lja1g3491 1 43496935 43499248 ECH