Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3487 ATGCAACAAGGTGATTACAGTTCCGCTCCATATTACCAATTCCCTCATCTCCAAAACCCTAATCCCATTCCCAGTAGTAACCCTAACCCTTCCGATCCACTCCCCAATCCTTACGCTTCTGCTCCTCCTTTCACTCCCAATTACGCCGCTCCTTCCTCCGATTACCCTTCTTCCTACCCCTCTTACCCCCCAAACCCCGATCCAATTCCACCCACTGCTCCTCCTTCTTACCCTCCTCAATCATACAATCCTCCTCCCTACGAATCAATCCCATCCTACCAACAACCACCCTATTACCCCCCTTACGATCAAAACTACGCCCCTCCTCCAAACCCTATTCCCAATTCAACCTCCTCTTTGTACAACCACGGCGGATCGTCACTCCCGCCGATTCCAGCCTACGAAACCCCCTATGAGAATCCGGTGAAATCCGATTACGGCGGTGGCGGTGCTTATTTCGATGACAGGTACGGGAGTTTCAATCGGACTCGCTCTGACCCGGGATCCGATCTTTACGGGAAGCGCCACGATGGCGGTGGTGGTGATGATGGTTTTGGAGATGGGGTGTATGCTTATGAAGGGGGCAAGGTGGAACCCTATGGGGCGCGGGGGACTGCTCCGAAATCGTCGACTTGGTCTTCGTTTGATGATTATGGGAGGTCGATTAGTGTTCCCTCTCCGAAGGAATCGTCTCCGGCGAGTAAGATTGTGAAAGCTGTGCCCAAGGTTGATGTTCAGGAAGATGTGAGAAGTGCGGTGCAGAAATTTCGGGTCAAGATGTTGGCTGAAAGTGTTGGTCAGGGCACTATGGATGTTCTCTGTCAGGTTAGTTTGGATGGAATTCGCATGCTGGATCCAAATACCAATCGGACATTGAGAATATATTCTCTTGAGAACATAACAAGATGTGATAAATTCGATTCATCTACCTTTGCATTTTGGTCAAAAAGCCCTGTGGACATTGAGCCAAGGAGAATCAGATTGCAATCTAATAGTTACACCACTAACACACTTTTGGATACTGTCACTGCTGCAACCATACAGTTCAAGGAAATGGGTGGAAGCAGGAGGCCTGTTGAATCATTGAAAGCAAATGAACAGCCTGCAGACAGAAAGAAAGGCTTAGGCGATTGGATGAATCTGATTAAACCTGCCAATGAAGAGAAGGATCATTGGGTCCCAGATGAAGCAGTCTCAAAATGTACAGCATGTGGTGCTGATTTTGGGGCTTTTATTCGCAGGCATCACTGTAGGAACTGTGGTGATATTTTCTGTGACAAATGCACACATGGTAGGATTGCTCTAACTGCGGAGGAGAATGCTCAGCCAGTACGAGTTTGTGACCGTTGCATGGCAGAAGTTACTCAGAGGCTGAGTAGTGCTAAAGAGGCATCAAGTAAACCTGTTTTGCAGAGCCATGAGGATCTTGCCAGGAAACTTCAGGAGGAGCTGGAGAGAAATCGAAAATCATCAGGTTCCAAGTCTGATGGATCTGGAAGACGGATGAAGGAAGTTGCATGTCCTATCTGCACTGTCCATCTGCAGGTTCAGGTGCCTAGCTCAGGTTCGGAGACCATTGAGTGTGGAGTTTGCCAGCACCCATTTCTTGTGAGTTCCTATTGA 1623 0.4849 MQQGDYSSAPYYQFPHLQNPNPIPSSNPNPSDPLPNPYASAPPFTPNYAAPSSDYPSSYPSYPPNPDPIPPTAPPSYPPQSYNPPPYESIPSYQQPPYYPPYDQNYAPPPNPIPNSTSSLYNHGGSSLPPIPAYETPYENPVKSDYGGGGAYFDDRYGSFNRTRSDPGSDLYGKRHDGGGGDDGFGDGVYAYEGGKVEPYGARGTAPKSSTWSSFDDYGRSISVPSPKESSPASKIVKAVPKVDVQEDVRSAVQKFRVKMLAESVGQGTMDVLCQVSLDGIRMLDPNTNRTLRIYSLENITRCDKFDSSTFAFWSKSPVDIEPRRIRLQSNSYTTNTLLDTVTAATIQFKEMGGSRRPVESLKANEQPADRKKGLGDWMNLIKPANEEKDHWVPDEAVSKCTACGADFGAFIRRHHCRNCGDIFCDKCTHGRIALTAEENAQPVRVCDRCMAEVTQRLSSAKEASSKPVLQSHEDLARKLQEELERNRKSSGSKSDGSGRRMKEVACPICTVHLQVQVPSSGSETIECGVCQHPFLVSSY* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3487 540 MobiDBLite consensus disorder prediction 1 20 - -
Lja1g3487 540 MobiDBLite consensus disorder prediction 1 180 - -
Lja1g3487 540 SUPERFAMILY PH domain-like 250 318 - -
Lja1g3487 540 Pfam FYVE zinc finger 391 455 IPR000306 GO:0046872
Lja1g3487 540 Gene3D - 217 348 IPR011993 -
Lja1g3487 540 SUPERFAMILY FYVE/PHD zinc finger 390 464 IPR011011 -
Lja1g3487 540 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 395 455 IPR017455 -
Lja1g3487 540 PANTHER PROTEIN FREE1 1 539 IPR045893 GO:0036258|GO:0043130
Lja1g3487 540 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 382 460 IPR013083 -
Lja1g3487 540 PANTHER PROTEIN FREE1 1 539 - -
Lja1g3487 540 MobiDBLite consensus disorder prediction 21 44 - -
Lja1g3487 540 Coils Coil 470 490 - -
Lja1g3487 540 SMART fyve_4 387 456 IPR000306 GO:0046872
Lja1g3487 540 MobiDBLite consensus disorder prediction 57 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3487 Lja-Chr1 43471068 43476505 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3487 383 468 EF-hand Containing Proteins AT3G14270 35.052 2.29e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3487 - - gmx:100794840 741.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3487 1 43471068 43476505 Lja1g3487 1 43471068 43476505 ECH