Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3477 ATGACTCAAGATCTTGAGATGAAGGATCGCTCAACGCCTTCAAACTCGGTTTCGACGCCTGTTCCTTCTACTCTGCACCATTTGAAGGAGATAGCTTCACTCATTGAGACCGGTTCTTACTCGAAAGAAGTTCGGAGAATTGCGCGTGCTGTTCGCCTCACAATTCAATTGAGGCGCAAATTGACTGCTTCGATTATCTCGTCTTTTCTCGATCATGTTCTCACTCCCGGTTCTGAGGCTCATGCCAAATTGTCTGCTTATCTTCCCAAGGAGGATGATCATGAGATGGAAGTGGATGCCGCAACTTCTGCTATTCAAGCAACTTCTGCTATTCAAACACCGGCCAAACATTTGCTTCCTGAGCTAGAAATCTACTCTTACCTTCTTGTATTACTTTTTCTGATTGATCAGAAAAGATACAATGAGGCCAAAGCCTGTTCCTCAGCTAGTGTTGCTTGGCTGAAGAACGTGAACAGAAGAACTGTTGATGTTATTGCATCCAGACTGTATTTTTACTATTCTTATAGCTATGAGCTCACGGGTGATCTTGCTGAAATTCGGGGCAATCTCCTTGCTTTGCACCGGATTGCCACCCTGCGTCATGATGAGTTGGGTCAGGAAACCCTTCTTAACCTGTTACTTCGCAACTACCTTCACTACAATCTATATGATCAGGCGGAGAAGTTAAGATCTAAGGCTCCACGGTTTGAAGCACATTCAAACCAGCAGTTCTGTCGCTATCTCTTTTACCTTGGGAAGATTCGGACGATTCAGTTGGAGTACACCGATGCGAAGGAATCTCTTCTGCAAGCTGCTCGGAAAGCTCCAGTTGCAGCACGGGGTTTCCGAATTCAATGTAACAAGTGGGCTGTGATAGTGCGTTTACTGCTGGGAGAAATACCTGAGCGGACTGTCTTTATGCAAAAAGGAATGGAGAATGCTCTGAGGCCTTACTTTGAGCTTACTAATGCTGTCAGGATTGGAGACTTGGAGCTTTTTAGGAATATTGCAGACAAATTCGCTACCACCTTCAATGCAGACGGAACTCATAATTTGATTGTACGCCTGCGGCACATTGTCATCAGGACTGGTTTACGTAACATCAGCATCTCATACTCCCGCATCTCATTGGCAGATGTTGCTAGAAAATTGAGGTTGAACTCTGCAAGTCCCGTTGCTGATGCTGAGAGCATTGTATCAAAGGCTATCCGTGATGGGGCAATTGATGCTACATTGGATCATGCAAATGGTTGGATGGTCTCTAAGGAAACTGGAGATATTTACTCCACCAATGAGCCTCAGTTGGCTTTCAATTCTAGGATTGCCTTTTGTCTTAACATGCACAATGAGGCTGTGCGAGCCCTGCGTTTTCCGCCGAACACACACAAAGAAAAGGAAAGTGCTGAGAAGAGGAGAGAGAGGCAACAGCAAGAGCAAGAACTAGCTAAGCATATTGCAGAGGAGGATGATGACGACTTCTGA 1482 0.4534 MTQDLEMKDRSTPSNSVSTPVPSTLHHLKEIASLIETGSYSKEVRRIARAVRLTIQLRRKLTASIISSFLDHVLTPGSEAHAKLSAYLPKEDDHEMEVDAATSAIQATSAIQTPAKHLLPELEIYSYLLVLLFLIDQKRYNEAKACSSASVAWLKNVNRRTVDVIASRLYFYYSYSYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAARGFRIQCNKWAVIVRLLLGEIPERTVFMQKGMENALRPYFELTNAVRIGDLELFRNIADKFATTFNADGTHNLIVRLRHIVIRTGLRNISISYSRISLADVARKLRLNSASPVADAESIVSKAIRDGAIDATLDHANGWMVSKETGDIYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPPNTHKEKESAEKRRERQQQEQELAKHIAEEDDDDF* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3477 493 Pfam Proteasome regulatory subunit C-terminal 426 492 IPR013586 GO:0000502|GO:0030234|GO:0042176
Lja1g3477 493 MobiDBLite consensus disorder prediction 458 486 - -
Lja1g3477 493 Gene3D - 248 423 - -
Lja1g3477 493 ProSiteProfiles PCI domain profile. 245 426 IPR000717 -
Lja1g3477 493 SMART PINT_4 351 444 IPR000717 -
Lja1g3477 493 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3 1 493 - -
Lja1g3477 493 Coils Coil 460 487 - -
Lja1g3477 493 MobiDBLite consensus disorder prediction 458 493 - -
Lja1g3477 493 MobiDBLite consensus disorder prediction 1 22 - -
Lja1g3477 493 Pfam PCI domain 317 422 IPR000717 -
Lja1g3477 493 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 1 493 - -
Lja1g3477 493 SUPERFAMILY "Winged helix" DNA-binding domain 355 427 IPR036390 -
Lja1g3477 493 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 351 444 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3477 K03033 - gmx:100814379 873.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3477 1 43371955 43375967 Lja1g3477 1 43371955 43375967 ECH