Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3472 ATGATACTACTTCACTCCAGTGGCTATTGCCGCGTTTCCACGCCAAGAGCATTCAAATTCCAAACACCACTTTCTCCTTCACTCCTTTTCTCTGCAACCAACTCCAAATCTCGTTCCGCCATTGCAAGAGCTAGTTCTGGTTTCGCCGATAACTCCGACTCCGGTGACGGCGGAGAGCCAAGGGCGAATTACGCCGGCGTGCAGTTGGAGGAGATCGTCGATAACAGAATCGGATCTGGAAAACCTAGACTCGATAGTTGGATCTCTACTCGCATCAATGGAATCAGTAGAGCTCGCGTGCAATCAAGTATCAAATCTGGACTCGTTCATGTCAATGGCCGCGTTGTTAATAAGGTTTCTTTCAATGTCAAATCTGGTGATGAGATCAAGTGTACAATTGCTGAGTTGCAGAGTTTGAGGGCTGTGCCAGAAGATATACCTTTGGATATAGTTTATGAAGATGAGCATTTGCTAGTCATAAATAAACCGGCACACATGGTTGTGCATCCAGCACCTGGCAATACATCTGGGACGCTTGTAAATGGCATTCTTCACCATTGCAACCTTCCAAATGCTGAATTTTCTAACGAGGACGCTCTTGCATATACAGAAGATTCTGATGATGAATTGAATAGCTTCTTCCAGGCAAGTTCTTGTGAAGGGTCTGCGGCATCAATTCGCCCTGGAATCGTACACAGATTGGACAAAGGCACAAGTGGATTACTTGTTGTTGCGAAGGATGAACATTCTCATAAGAAATTGTCTGAACAATTCAAGCTACGTACTATCAAGAGGGTCTATGTTAGTCTTACTATTGGGGTACCTACTCCAGTTGCTGGGCGAATTGAGGTTGCAGTTGGCCGTGATCCTAATAATCGGATTCGTATGACCGCTGTAACTGGACCAGCTAGTTCCATGAAGGCCCGTCATGCTGCTAGTAGGTACAAAGTAATTGAGACACTTGCTGGAGGAAGTTGTGCATTGGTTGAGTGGAAGTTGGAAACTGGGCGCACTCATCAGATCCGTGCGCATGCCAAGTACTTGAATGTTCCTCTACTGGGTGATGAGGTATATGGTGGGACCAAAAGCATGATCATGTCACTGCTACGGCTCCGAACACCTCCAAGTTTGCATAGCGGAATTATGAAAATGGTTTCTGCCTTGGATAGGCCTTGCCTTCACGCATTGACTCTCGGGTTTCAGCATCCCCATTCAGGGGAGCAGGTGCACTTCTCATGCCAACCCCCTGTAGACTTTGATGAGATTTTGGACCAGCTTCGTAAAATTGGCAGTGAGAAGGTTTCTTACTCAAAGCGTTCAAAATTCTAA 1329 0.4612 MILLHSSGYCRVSTPRAFKFQTPLSPSLLFSATNSKSRSAIARASSGFADNSDSGDGGEPRANYAGVQLEEIVDNRIGSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNRIRMTAVTGPASSMKARHAASRYKVIETLAGGSCALVEWKLETGRTHQIRAHAKYLNVPLLGDEVYGGTKSMIMSLLRLRTPPSLHSGIMKMVSALDRPCLHALTLGFQHPHSGEQVHFSCQPPVDFDEILDQLRKIGSEKVSYSKRSKF* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3472 442 Gene3D Pseudouridine synthase 139 415 - -
Lja1g3472 442 TIGRFAM rluA_subfam: pseudouridine synthase, RluA family 82 427 IPR006225 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lja1g3472 442 Pfam S4 domain 83 129 IPR002942 GO:0003723
Lja1g3472 442 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 81 428 - -
Lja1g3472 442 SUPERFAMILY Alpha-L RNA-binding motif 82 169 - -
Lja1g3472 442 SUPERFAMILY Pseudouridine synthase 142 427 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lja1g3472 442 PANTHER RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE D 81 428 - -
Lja1g3472 442 Pfam RNA pseudouridylate synthase 156 345 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lja1g3472 442 SMART s4_6 82 147 IPR002942 GO:0003723
Lja1g3472 442 ProSitePatterns Rlu family of pseudouridine synthase signature. 231 245 IPR006224 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lja1g3472 442 CDD PseudoU_synth_RluA_like 157 379 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lja1g3472 442 ProSiteProfiles S4 RNA-binding domain profile. 82 155 - -
Lja1g3472 442 Gene3D - 67 137 IPR036986 GO:0003723
Lja1g3472 442 CDD S4 83 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3472 Lja-Chr1 43324072 43330793 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3472 K06180 - gmx:100810383 690.649
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3472 1 43324072 43330793 Lja1g3472 1 43324072 43330793 ECH