Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3470 ATGGCCTTCTTCGTCAAATCAAGTGTACGCTTGCACCGTTCCCTCTCACCCCTCTCACCCACCACTTTCAAACTATACTCTTCTCCAGCTTCACCTCAACATGACCTCATCGCCGAAAAGTTCCACACAGCGATCAAAGACCACCACCGCAAAAACCCTAACCCCGACGCCGCGCCACCCTCACCTACTCTCACAATCCCCGACCTCGCCCTCGAATTCTCTAGACTCTCCGCCGCCCACCCAATCTCCCCCTCCACCGCCCGCCGCGTCATCGAGAAATGCGGCGCCATCCGCCACGGGATCCCCTTCTACCAGTCCCTCGCATTCTTCAACTGGGCCACCTCCCTAAAAAATTTCCCCTCCTCGCCTGAACCCTACATCGAGATGCTCGACCTCGCCGGAAAGCTCCGACACTTCGACCTCGCGTGGCACCTCATCGATTCGATGAAGACCCGCGGCGTTGAGATAACGGCTGAGACGTTCTCCGTCCTCATCCGCCGCTACGTGAGAGCAGGATTGGCGGCGGAGGCGGTGCACGCTTTCAACCGGATGGAAGATTACGGTGTTGCCCCTGACAAGGTTGCGGTTTCAATTGTGGTTAGTAGCTTGTGTAGGAAGCGTAGAGCGGAAGAAGCTCAATCGTTTTTTGACAGTGTGAAGGACAGGTTTGAACCTGATGTGATATTGTACACTAGCTTAATTCATGGGTGGTGCAGGGCTGGGAAGATAGAAAGAGCTGAAGAGATTTTCAAGGACATGAAAGATGCTGGAATTAAGCCTAATGTTCATACTTACAGCATTGTGATTGACTCACTGTGTAGATGCGGGCAAATCACGCGTGCTCATGATGTTTTCGCTGAGATGATTGATGCAGGTTGTAATCCGAATGCGGTTACTTTCAATAGTCTTATGCGGGTTCATGTCAAAGCTGGAAGGACTGAAAAGGTCTTACAGGTTTTCAATCAGATGAAGAGGTTCAATTGTGCTGCTGATACTATTGGCTATAATTTCCTGATTGAGTGTCATTGTAGGGATGAGAATCTTGAAGAGGCTGTGAAAGTTCTCAACTTGATGGTTAAGAAAGGGGTTGCTCCTAATTCATCCACTTTCAATTCAATTTTCGGGTGCATAGCTAAGTTGCATGATGTGAATGGCGCTCATCGGATGTATGCTAAGATGAAGGAACTGAATTGCTTGCCCAACACATTGACTTATAATATACTGATGAGAATGTTTGCTGAGTCGAAATCTATTGACATGGTTCTGAAATTGAAGAAGGAAATGGATGAGAATCAAGTGGAGCCTAACGTGAACACTTACCGCATTTTGATTTTGATGTTCTGTGAAAAGGGGCACTGGAACAATGCCTACAAGTTGATGAAGGAGATGGTTGAAGAAAAAAGCCTAAAACCAAATCTGCAAGTTTATGAAAATGTTCTAGAGCTGCTGAGGAAGGCTGGACAGCTTAAAATGCATGAAGAGTTGGTGGAGAAGATGGTTGCCAGGGGATTTGTCTCTCGCCCTTTGTAG 1530 0.4797 MAFFVKSSVRLHRSLSPLSPTTFKLYSSPASPQHDLIAEKFHTAIKDHHRKNPNPDAAPPSPTLTIPDLALEFSRLSAAHPISPSTARRVIEKCGAIRHGIPFYQSLAFFNWATSLKNFPSSPEPYIEMLDLAGKLRHFDLAWHLIDSMKTRGVEITAETFSVLIRRYVRAGLAAEAVHAFNRMEDYGVAPDKVAVSIVVSSLCRKRRAEEAQSFFDSVKDRFEPDVILYTSLIHGWCRAGKIERAEEIFKDMKDAGIKPNVHTYSIVIDSLCRCGQITRAHDVFAEMIDAGCNPNAVTFNSLMRVHVKAGRTEKVLQVFNQMKRFNCAADTIGYNFLIECHCRDENLEEAVKVLNLMVKKGVAPNSSTFNSIFGCIAKLHDVNGAHRMYAKMKELNCLPNTLTYNILMRMFAESKSIDMVLKLKKEMDENQVEPNVNTYRILILMFCEKGHWNNAYKLMKEMVEEKSLKPNLQVYENVLELLRKAGQLKMHEELVEKMVARGFVSRPL* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3470 509 Pfam PPR repeat family 225 274 IPR002885 -
Lja1g3470 509 Pfam PPR repeat family 331 376 IPR002885 -
Lja1g3470 509 Pfam PPR repeat family 400 448 IPR002885 -
Lja1g3470 509 SUPERFAMILY TPR-like 159 323 IPR011990 GO:0005515
Lja1g3470 509 Pfam PPR repeat 195 221 IPR002885 -
Lja1g3470 509 Pfam PPR repeat 298 328 IPR002885 -
Lja1g3470 509 Pfam PPR repeat 160 189 IPR002885 -
Lja1g3470 509 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 366 400 IPR002885 -
Lja1g3470 509 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 401 435 IPR002885 -
Lja1g3470 509 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 331 365 IPR002885 -
Lja1g3470 509 Gene3D Tetratricopeptide repeat domain 292 381 IPR011990 GO:0005515
Lja1g3470 509 Gene3D Tetratricopeptide repeat domain 94 219 IPR011990 GO:0005515
Lja1g3470 509 Gene3D Tetratricopeptide repeat domain 382 508 IPR011990 GO:0005515
Lja1g3470 509 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 226 260 IPR002885 -
Lja1g3470 509 Gene3D Tetratricopeptide repeat domain 220 291 IPR011990 GO:0005515
Lja1g3470 509 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 157 191 IPR002885 -
Lja1g3470 509 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 436 471 IPR002885 -
Lja1g3470 509 PANTHER CHLOROPLAST RNA PROCESSING 1-LIKE PROTEIN 27 508 - -
Lja1g3470 509 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 261 295 IPR002885 -
Lja1g3470 509 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 296 330 IPR002885 -
Lja1g3470 509 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 27 508 - -
Lja1g3470 509 TIGRFAM PPR: pentatricopeptide repeat domain 298 331 IPR002885 -
Lja1g3470 509 TIGRFAM PPR: pentatricopeptide repeat domain 369 402 IPR002885 -
Lja1g3470 509 TIGRFAM PPR: pentatricopeptide repeat domain 229 262 IPR002885 -
Lja1g3470 509 TIGRFAM PPR: pentatricopeptide repeat domain 263 297 IPR002885 -
Lja1g3470 509 TIGRFAM PPR: pentatricopeptide repeat domain 439 472 IPR002885 -
Lja1g3470 509 TIGRFAM PPR: pentatricopeptide repeat domain 335 366 IPR002885 -
Lja1g3470 509 TIGRFAM PPR: pentatricopeptide repeat domain 404 437 IPR002885 -
Lja1g3470 509 TIGRFAM PPR: pentatricopeptide repeat domain 160 192 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3470 259 504 Miscellaneous Gene Families AT4G11690 25.591 8.22e-18 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3470 - - gmx:100800850 830.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3470 1 43314710 43316664 Lja1g3470 1 43314710 43316664 ECH