Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3466 ATGGCCACCGTCACTTCCACCGCCGTTGCTATTCCATCATTCACCGGCCTTAAGTCAGCCGGAAGCAAAGTCAGTGCCAGTGCTAAGGTGTCATCATCACCTTCCCAAATGCCAAGGCTCAGCGTCAAGGCTTCACTCAAGGACTTTGGAGTTGCTGTTGTTGCCACTGCTGCATCCGCAGTGCTAGCTAGCAACGCCATGGCCATTGAAATCTTGCTCGGTAGTGATGATGGTGGTCTGGCTTTTGTTCCCAACTCTTTCTCAGTGGCTCCTGGGGAGAAGATCACGTTCAAGAACAATGCTGGTTTCCCTCACAACGTTGTCTTCGACGAGGATGAGGTTCCTGGCGGTGTTGATGCTTCCAAGATCTCCATGTCTGATGAAGATCTTCTCAACGCGCCTGGTGAGACTTACAGTGTTACCCTGGATGCTAAGGGTACTTACAAGTTCTACTGTTCCCCTCACCAAGGTGCTGGTATGGTTGGAAGCGTCACTGTTAATTAA 504 0.5079 MATVTSTAVAIPSFTGLKSAGSKVSASAKVSSSPSQMPRLSVKASLKDFGVAVVATAASAVLASNAMAIEILLGSDDGGLAFVPNSFSVAPGEKITFKNNAGFPHNVVFDEDEVPGGVDASKISMSDEDLLNAPGETYSVTLDAKGTYKFYCSPHQGAGMVGSVTVN* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3466 167 PANTHER PLASTOCYANIN MAJOR ISOFORM, CHLOROPLASTIC-RELATED 1 167 - -
Lja1g3466 167 ProSitePatterns Type-1 copper (blue) proteins signature. 146 160 IPR028871 -
Lja1g3466 167 CDD Plastocyanin 69 167 IPR002387 GO:0005507|GO:0009055
Lja1g3466 167 PANTHER PLASTOCYANIN 1 167 - -
Lja1g3466 167 TIGRFAM cyanin_plasto: plastocyanin 69 167 IPR002387 GO:0005507|GO:0009055
Lja1g3466 167 Gene3D - 69 167 IPR008972 -
Lja1g3466 167 Pfam Copper binding proteins, plastocyanin/azurin family 70 167 IPR000923 GO:0005507|GO:0009055
Lja1g3466 167 PRINTS Plastocyanin signature 74 93 IPR002387 GO:0005507|GO:0009055
Lja1g3466 167 PRINTS Plastocyanin signature 97 115 IPR002387 GO:0005507|GO:0009055
Lja1g3466 167 PRINTS Plastocyanin signature 146 165 IPR002387 GO:0005507|GO:0009055
Lja1g3466 167 PRINTS Type I copper blue protein family signature 88 101 IPR001235 GO:0005507|GO:0009055
Lja1g3466 167 PRINTS Type I copper blue protein family signature 103 118 IPR001235 GO:0005507|GO:0009055
Lja1g3466 167 PRINTS Type I copper blue protein family signature 144 158 IPR001235 GO:0005507|GO:0009055
Lja1g3466 167 SUPERFAMILY Cupredoxins 66 167 IPR008972 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3466 K02638 - jre:109013946 246.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3466 1 43253356 43254901 Lja1g3466 1 43253356 43254901 ECH