Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3463 ATGTTCCTGTGGATATATTTTATATTCCGTCATGTTCTCATTTTCTTCACGTCGCTCCTCCATCCTGGATTTCACAATCACATACCCCCAGTCTATATATACACATGGATCCATCATTCGTATTATCCAACATCAGATCTTCCAATCAATTTCAAATACTCCTTTTGTTTTCTTTCACCTAGCTATACCTACCTATCTAGTACTAAGAGAAGCCAAACAATGCCTTCACTAGTCTCCGGGGAAATCCAAGCCAAAGATGCTGCCGAGTCTCTAAGCCTGAACCCAATTTTTAGTGCCTCAGGAGTGAAGGGAAAGCGAGTTACCGCATTGACCAAAGAATGTGACATGTCTCATCTCATTGAATCCATCATTGCTGACAAACCAGACATGGATTCTTCATTCAGCGTGCTTGATCTTGGGGTAGTCATGGAACTCATGGACAAGTGGGTCACCAAGTTCCCCACCGTTCAGCCTTTCTACGCCGTCAAGTGCAACCCCGACATCTCCCTCATCGGCGCCCTCGCCGCACTAGGCTCCAGCTTCGACTGCGCCAGCAAAGCTGAGATCCAAATCGTCTTGTCCCTCGGCATCTCACCGGACCGCATTGTCTACGCCAACCCGTGCAAATCCGAGTCCGACATCAAGTATGCCGCAACCGTCGGCGTCAACCTCGCAACCTATGACTCCGTGTACGAGGTTGACAAGGTACAAAAGTGGCACCCGAAATGCGAGTTGCTCCTCCGCATAAAGTATGACAGTGAAGGAGCATTGGCATCGCTCGGCGTCAAATACGGCGCGCTCCCTGAGGAAGTCCCGGAGCTTCTCAAAGCCGCTGAGGCGGCAGGCGTAAATGTGACTGGCGTGTCGTTCCACATTGGCAGCGGGGGAGCCGACCCGCTAGCCCTCTCCGGAGCTATCGAAGCCGCCAAGAGCGTCTTTGAGATGGCAAGCCATTTCGGAATGTCCAGGATGTCTATCCTCGACATCGGGGGTGGGTTCACCTGCGGACCAGAGCTGGACGTTGCGGCCACGAAGGTGAAGGCTGCAATTCTAGCCCACTTCGGAGACCACCAGGGTCTCGTGGTTATCGCAGAGCCTGGTCGTTACTTCACGGAAACGGCGTTCACGTTAGTTAGCAGGGTTATTGGGAAACGAGTTAGGGGAGAGTTGAGGGAGTATTGGATCAATGATGGAGTTTATGGATCTATCAGTAACATAATATATGACCACGCTACCATTAGGTGCGCACCACTAAGGCAAAAGAATCTCACGTGCGTGGATGCGAAGACCTACCCTACCACCGTGTTCGGACCCACATGCGATTGCATTGACATTGTTCTCAAGGATTACCAGCTACCAGAACTGCAGGTGAATGATTGGCTTGTGTTCCCGAATATGGGAGCTTATACTATTTCTTCAGGGACTAACTTCAATGGGTTTACTTCAGCAGTCAAACATGTCTATCTCGCATGTTCTGAACAATCCTAA 1488 0.5027 MFLWIYFIFRHVLIFFTSLLHPGFHNHIPPVYIYTWIHHSYYPTSDLPINFKYSFCFLSPSYTYLSSTKRSQTMPSLVSGEIQAKDAAESLSLNPIFSASGVKGKRVTALTKECDMSHLIESIIADKPDMDSSFSVLDLGVVMELMDKWVTKFPTVQPFYAVKCNPDISLIGALAALGSSFDCASKAEIQIVLSLGISPDRIVYANPCKSESDIKYAATVGVNLATYDSVYEVDKVQKWHPKCELLLRIKYDSEGALASLGVKYGALPEEVPELLKAAEAAGVNVTGVSFHIGSGGADPLALSGAIEAAKSVFEMASHFGMSRMSILDIGGGFTCGPELDVAATKVKAAILAHFGDHQGLVVIAEPGRYFTETAFTLVSRVIGKRVRGELREYWINDGVYGSISNIIYDHATIRCAPLRQKNLTCVDAKTYPTTVFGPTCDCIDIVLKDYQLPELQVNDWLVFPNMGAYTISSGTNFNGFTSAVKHVYLACSEQS* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3463 495 Pfam Pyridoxal-dependent decarboxylase, C-terminal sheet domain 372 467 IPR022643 GO:0003824
Lja1g3463 495 SUPERFAMILY PLP-binding barrel 138 372 IPR029066 -
Lja1g3463 495 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 142 371 IPR022644 GO:0003824
Lja1g3463 495 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 282 295 IPR000183 GO:0003824
Lja1g3463 495 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 180 192 IPR000183 GO:0003824
Lja1g3463 495 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 362 381 IPR000183 GO:0003824
Lja1g3463 495 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 467 480 IPR000183 GO:0003824
Lja1g3463 495 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 160 178 IPR000183 GO:0003824
Lja1g3463 495 PANTHER ORNITHINE DECARBOXYLASE-LIKE 103 491 - -
Lja1g3463 495 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 160 178 IPR022653 -
Lja1g3463 495 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 130 490 IPR009006 GO:0003824
Lja1g3463 495 PANTHER ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE 103 491 IPR002433 GO:0006596
Lja1g3463 495 SUPERFAMILY Alanine racemase C-terminal domain-like 349 484 IPR009006 GO:0003824
Lja1g3463 495 Gene3D Alanine racemase 142 370 IPR029066 -
Lja1g3463 495 CDD PLPDE_III_ODC 131 488 - -
Lja1g3463 495 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 signature 2. 317 334 IPR022657 -
Lja1g3463 495 PRINTS Ornithine decarboxylase signature 202 226 IPR002433 GO:0006596
Lja1g3463 495 PRINTS Ornithine decarboxylase signature 158 185 IPR002433 GO:0006596
Lja1g3463 495 PRINTS Ornithine decarboxylase signature 434 444 IPR002433 GO:0006596
Lja1g3463 495 PRINTS Ornithine decarboxylase signature 132 156 IPR002433 GO:0006596
Lja1g3463 495 PRINTS Ornithine decarboxylase signature 454 467 IPR002433 GO:0006596
Lja1g3463 495 PRINTS Ornithine decarboxylase signature 232 254 IPR002433 GO:0006596
Lja1g3463 495 PRINTS Ornithine decarboxylase signature 397 410 IPR002433 GO:0006596
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3463 K01581 - gmx:548088 588.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3463 1 43226643 43229946 Lja1g3463 1 43226643 43229946 ECH