Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3433 ATGGACCTTCTCCGGCTAGGGTTTCTCACCTCGCTCTCTCTATTACAGGTTTGGCTAATTTTATCTTCTGTAGAAGCTGACGATTCATCCACAAGGCTTCTTTTGGCATCCAATGCCGAAACGCCAGGGGAAAGACATTCTGAGGATTATTGTGCAATGTATGACATTTGTGGAACACGCAGCGATGGTAAAGTATTGAACTGTCCATTTGGTTCCCCAGCTGTAAAGCCAGATGATTTGCTTTCGTCTAAGATCCAAAGTATGTGTCCAACAATTACTGGGAACGTTTGCTGTACAAAAGCTCAATTTGACACATTGCAGACACAAGTGCAACAGGCAATTCCTTTTCTTGTAGGTTGTCCAGCTTGCTTAAGAAACTTCTTGAATCTGTTCTGTGAGCTTACATGCTCTCCAAATCAGAGTTTATTCATCAATGTGACTTCAGTTGACAAGGCTGGTGGTAATTCGACAGTGGGTGGGATTGATTATTTTGTAAGTGATGCTTTTGGTGAAGGGTTATATGAGTCCTGCAAGGATGTGAAGTTTGGCAGCATGAACTCTCGAGCTATACAATTTATTGGTGCCGGTGCTCAAAATTTTAAAGAGTGGTTTGCTTTTATTGGTAGAAAAGCAGCCCCTAATAGTCCCGGTTCACCATATGCGATTATGTTCCGGCCTAATGCAACCAAGTCATCTGGGATGAAACCTATGAATGTTTCAGCTTATTCATGCAGTGATACTTCTCTTGGCTGTTCTTGTGGTGACTGTCCTTCATCTTCAGTATGCTCTAATTCAGCTTCAACTACCATCAATAAGGCGAATTCCTGCTCCATAAAAGTGGGGAGTTTAACGGTGAAGTGCGTTGACTTTATTTTGGCAGTCTTATACATAATACTAATTTGTGTGTTCTTGGGTTGGGCACTGTATCATCGTATAAGGGAAAGAAAGATGACCTATCGAACAGAACCAGTGTCCAATGTCATTAGTGGTGGTGTGTTGTATGCTCGTAATCAGGAGAAGGATGAAAACCTCCCAATGCAGATGATTGAAGATGTTCCACAAAACAGAAATGGAGTCCGGCTCTCAGTTGTGCAAGGATACATGTCAAATTTTTACAGGAAATATGGATCACTTGTAGCTAGACATCCAATTAACGTCTTGGCTTTAACTCTGGCTATAGTTCTTTTACTTTGTCTTGGTCTAATTCGATTCAAGGTTGAGACACGGCCTGAGAAACTCTGGGTTGGACCTGGGAGTAAAGCAGCACAAGAGAAGCAGTTTTTTGATAGCCATCTTGCTCCATTTTACAGAATTGAACAGCTCATACTGGCAACAGTCCCAGATCATATGAATAGCACATCACCAAGAATTGTATCTGCGGACAACATCAGATTTCTGTTCGAAGTACAAAAGAAGGTTGACGCAATTCGTGCTAATTATTCTGGCTTAATGGTATCTCTCCAAGACATCTGTATGAAGCCACTAGACAAAGATTGTGCCACTCAAAGTGTCCTGCAGTACTTCAAAATGGACCCTAGAAATTTTGATGATAGTGGGGCAGTTGAGCATCTCAATTACTGTTTCCAGCAATATTCCTCAGCAGATCAATGCATGAGCGCATTTAAAGCTCCTCTTGATCCTAGCACCGTGTTAGGAGGTTTTTCTGGGAAAGACTATTCTGGGGCATCCGCTTTTATTGTAACTTATCCGGTAAATAATGCTATTGATGAAGAAGGTAATGAAACAGCAAAAGCAGTTGCTTGGGAGAAGGCCTTTATTCAGTTGGTGAAGGATGAACTGTTACCAATGGCGCAATCAAGGAATTTGACGCTTGCTTTTTCGTCTGAAAGCTCCATTGAGGAAGAGTTGAAAAGAGAAAGTACTGCTGATGCTATTACTATATTGGTTAGCTACCTTGTGATGTTTGCTTATATATCTCTTACTTTAGGAGATACACCCCATCCTTCTTCTTTCTATATTTCTTCAAAGGTATTGCTTGGTCTTTCAGGAGTAATTCTCGTTATGCTGTCTGTCCTTGGATCAGTTGCCATTTTTAGTGCCCTTGGTGTAAAATCTACTCTGATCATTATGGAAGTTATCCCATTTCTTGTTCTAGCTGTTGGGGTGGATAATATGTGCATCCTAGTTCATGCTGTGAAAAGGCAACCGCTGGAATTGCCTTTAGAAGGAAGAATAAGCAATGCGCTTGTGGAAGTTGGACCATCAATAACACTGGCTAGTCTGTCAGAGGTGTTAGCTTTTGCAGTTGGAAGCTTTATTTCCATGCCTGCATGCCGTGTCTTTTCCATGTTTGCTGCATTGGCAGTTCTTTTGGATTTTGTCCTGCAAGTTACTGCTTTTGTAGCTCTGATAGTTCTTGACTCTCAGCGAGCAGAGGATAAGAGAGTTGATTGTTTTCCATGCATAAAAGTGCATTCATTTCATGCAGACCCTGATAAAGGTATTAGACAAAGGAAACCTGGTTTATTGGCTCGATATATGAAGGAGGTTCATGCTCCCATTCTTAGTATTTGGGGAGTAAAAATAGTTGTCATCGCTATTTTTGTGGCATTTGCATTGGCTAGCATTGCATTGAGCACTAGAATTGAACCTGGTTTAGAGCAGGAGATTGTTCTTCCCCGAGATTCGTATCTTCAGGGCTATTTCAATAATGTTTCAGAATATCTTAGAATTGGACCACCTTTGTATTTTGTTGTAAAGAACTATAACTACAGCTCAGAATCAACTCATACAAATCAGCTTTGCTCCATTAGCCAATGCAATTCAGACTCTCTTTTAAATGAGATATCTAAGGCGTCTCTAGTACCAGAGACGAGTTATATTGCCAAGCCAGCTGCCTCGTGGCTTGATGATTTTCTTGTGTGGATATCTCCAGAAGCATTTGGATGCTGCAGGAAGTTCACAAATGGGAGTTATTGCCCTCCTGATGATCAGCCTCCATGTTGTGCTCCTGAAGATGACTCTTGTGTTTCTGGAGCATGTAAAGATTGCACAACGTGTTTCCGTCACTCAGATCTTCGTAATGATCGTACATCTACAATGCAATTTAGGGACAAACTCCCATGGTTTCTTAGTGCTTTGCCATCTGCTGATTGTGCAAAAGGTGGTCATGGGGCGTACACCAGCAGTGTTGATTTGAAAGGCTATGACAGTGGCATTATTCAAGCATCATCGTTCCGTACATATCACACCCCACTCAACAAGCAGGTTGACTATGTTAATTCCATGAGGGCTGCTCGAGAGTTCAGTTCAAAAGTTTCTGATTCTTTGAAGATTGAGATTTTCCCATATTCAGTGTTCTATATGTTTTTTGAGCAATACCTTAATATATGGAAGACTGCACTGGTCACTCTTGCTATAGCTATTGGTGCAGTATTTATTGTGTGCTTGGTTATCACATGCAGTTTGTGGAGTTCAGCAATCATTTTGTTGGTTTTGGCTATGATTGTTGTTGATCTTCTGGGTGTGATGGCCATTCTTAATATCCAGTTGAATGCTGTCTCGGTGGTCAACCTAGTTATGTCAGTGGGCATTGCTGTCGAGTTTTGTGTGCACATCACCCATTCTTTCACTGTAGCAAGTGGGGACAAAGATCAACGTGTTAAGGAGGCTCTGGGTACAATGGGTGCTTCAGTCTTCAGTGGTATCACACTAACAAAATTGGTTGGAGTTATTGTTCTTTACTTCTCAAGAACAGAAGTTTTTGTGATTTATTACTTTCAGATGTACTTGTCGTTAGTACTTCTTGGTTTTCTGCACGGACTTGTTTTCTTGCCGGTGGTATTAAGCATCTTTGGTCCACCTTCAAGATGTACTATCATTGAACAAGAGGAAAATCGTTCATCAACTTCTTCATAG 3879 0.412 MDLLRLGFLTSLSLLQVWLILSSVEADDSSTRLLLASNAETPGERHSEDYCAMYDICGTRSDGKVLNCPFGSPAVKPDDLLSSKIQSMCPTITGNVCCTKAQFDTLQTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVDKAGGNSTVGGIDYFVSDAFGEGLYESCKDVKFGSMNSRAIQFIGAGAQNFKEWFAFIGRKAAPNSPGSPYAIMFRPNATKSSGMKPMNVSAYSCSDTSLGCSCGDCPSSSVCSNSASTTINKANSCSIKVGSLTVKCVDFILAVLYIILICVFLGWALYHRIRERKMTYRTEPVSNVISGGVLYARNQEKDENLPMQMIEDVPQNRNGVRLSVVQGYMSNFYRKYGSLVARHPINVLALTLAIVLLLCLGLIRFKVETRPEKLWVGPGSKAAQEKQFFDSHLAPFYRIEQLILATVPDHMNSTSPRIVSADNIRFLFEVQKKVDAIRANYSGLMVSLQDICMKPLDKDCATQSVLQYFKMDPRNFDDSGAVEHLNYCFQQYSSADQCMSAFKAPLDPSTVLGGFSGKDYSGASAFIVTYPVNNAIDEEGNETAKAVAWEKAFIQLVKDELLPMAQSRNLTLAFSSESSIEEELKRESTADAITILVSYLVMFAYISLTLGDTPHPSSFYISSKVLLGLSGVILVMLSVLGSVAIFSALGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQPLELPLEGRISNALVEVGPSITLASLSEVLAFAVGSFISMPACRVFSMFAALAVLLDFVLQVTAFVALIVLDSQRAEDKRVDCFPCIKVHSFHADPDKGIRQRKPGLLARYMKEVHAPILSIWGVKIVVIAIFVAFALASIALSTRIEPGLEQEIVLPRDSYLQGYFNNVSEYLRIGPPLYFVVKNYNYSSESTHTNQLCSISQCNSDSLLNEISKASLVPETSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCAPEDDSCVSGACKDCTTCFRHSDLRNDRTSTMQFRDKLPWFLSALPSADCAKGGHGAYTSSVDLKGYDSGIIQASSFRTYHTPLNKQVDYVNSMRAAREFSSKVSDSLKIEIFPYSVFYMFFEQYLNIWKTALVTLAIAIGAVFIVCLVITCSLWSSAIILLVLAMIVVDLLGVMAILNIQLNAVSVVNLVMSVGIAVEFCVHITHSFTVASGDKDQRVKEALGTMGASVFSGITLTKLVGVIVLYFSRTEVFVIYYFQMYLSLVLLGFLHGLVFLPVVLSIFGPPSRCTIIEQEENRSSTSS* 1293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3433 1292 Pfam Patched family 1057 1272 IPR003392 GO:0016021
Lja1g3433 1292 Pfam Patched family 424 909 IPR003392 GO:0016021
Lja1g3433 1292 ProSiteProfiles Sterol-sensing domain (SSD) profile. 630 793 IPR000731 -
Lja1g3433 1292 SUPERFAMILY Multidrug efflux transporter AcrB transmembrane domain 1081 1273 - -
Lja1g3433 1292 PANTHER NPC INTRACELLULAR CHOLESTEROL TRANSPORTER 1 7 1291 - -
Lja1g3433 1292 Pfam Niemann-Pick C1 N terminus 49 278 IPR032190 -
Lja1g3433 1292 TIGRFAM 2A060601: Niemann-Pick C type protein family 51 1273 IPR004765 GO:0005319|GO:0016021
Lja1g3433 1292 Gene3D Multidrug efflux transporter AcrB transmembrane domain 1080 1277 - -
Lja1g3433 1292 Gene3D Multidrug efflux transporter AcrB transmembrane domain 582 803 - -
Lja1g3433 1292 PANTHER PATCHED FAMILY PROTEIN 7 1291 - -
Lja1g3433 1292 SUPERFAMILY Multidrug efflux transporter AcrB transmembrane domain 586 793 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3433 45 1292 Miscellaneous Gene Families AT1G42470 73.899 0.0 1871
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3433 K12385 - gmx:100813262 2232.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3433 1 42823261 42838380 Lja1g3433 1 42823261 42838380 ECH