Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3021 ATGGATTATCGTGGTCTTGGATCTTCTTGTCGGAAATACGCCAAGCTTATTTCTGCGACCAATTGTCACATTGCTAACTCTTCATTTCACTTCCGTTTGCGCCATCCATGTTCCTCACATCATTCCACCTTATCCTATGTGTCATCACCACCACCACTAGGTGCTCTTCATGCCCAGTATTTGAAGAATGGTTCTCTTCAAACTTTGAACTCAGCTAACTATATCTTGAATCTCTACGTTAAATCCAGCAACTTAGACCATGCCCACAAGCTGTTTGATGAAATTCCCCACAGAGACACTCAGACATGGACCGTCCTCATATCAGGTTTTGCTAGAGCTGGCTCTTCAGAGATGGTCTTTAGTCTTTTCAGAGAAATGCAGGCAAAGGGTGCTTGTCCAAATCAGTATACATTGTCTAGTGTCTTCAAGTGCTGCTCAGCTGAAAAGAATCTTCAATTGGGTAAGGGAGTCCATGCCTGGATGCTCAGAAATGGGGTTGATGCAGATGTTGTGCTGGTGAACTCTATCCTTGATCTTTACTTGAAATGCAAGGCTTTTGAATACGCAGAAAGGTTGTTTGAGTTGACCGGTGAGGGAGATGTCGTGACGTGGAATATAATGATTCGTGCATATCTCGGTGCAGGAGATGTGGAGAAGTCTCTTGACATGTTCAGGAACTTGCCTAGCAAGGATGTTGTGAGTTGGAATACAATCATCGACGGGCTGATACGATGCGGTTATGAAAGACGTGCGCTAGAACTACTGTTCTGTATGGTGGAAAATGGGACTGAGTTCTCTGAAGTCACGTTCTCCATAGCTCTCATTTTGGCTTCTTCTTTATCACTGGTGGAGCTTGGGAAACAACTTCATGGGCGGGTCATAACATTGGCCTTGAATGGTGACAACTTTATAAATAGCTCACTTGTAGAAATGTATTGCAAGTGTGGGAGAACGGATAAGGCATCTGTAATTCTGAAAGATGTACCTCTGAATTTGTTGAGAACAGGGAATTCTGGAGGAATAGTTCCATGGAATTCCATGGTTTCTGGTTATGTTTGGAATGGAAAGTATGAAGACTGTTTGAAAACTTTCAGGTCAATGGTTCATGAACTGGCTATAGTGGATATTCGAACTGTTACAACCGTTATATCTGCTTGTGCTAATGCTGGACTTTTGGAATTCGGCAGGCAGATGCATGCCTACATTCAGAAAATTGGACATAGAATAGATGCTTATGTTGGTTCCTCCTTAATTCATATGTATTCTAAATCCGGTAGCTTGGATGATGCCTGGGTGATTTTCAGACAAATCAATGAACCAAATGTTTTCTTGTGGACTTCAATGATATCTGGCTGCGCGCTACATGGTAAAGGAAAGCAGGCAAGTAGTCTTTTTGAAGGAATGTTGAATCAGGGTATTGTACCGAATGAGGTTACTTTTTTAGGGGTTATAAATGCATGCAGCCATGTAGGGCTGCTTGAAGAAGGCTCCACATATTTTAGGATGATGAAAGATGTTTATTGCATCAATCCCGGAGTTGAACACTGCACTTCTATGGTTGATCTTTATGGTCGAGCAGGTTGCTTAATTGAGACAAAAAACTTTATCTTTGAGAATGGCATCTCTCACTTGACCTCTGTATGGAAATCATTTTTATCATCTTGTCGACTGCATAAAAACATTGAGATGGGAAAGTGGGTTTCTGAAATGTTGCTTCAAGTTGCACCATCTGATCCAGAAGCCTATATTTTGCTATCAAATATGTGCACTTCTAATCATAGATGGGACGAGGCTGCCATGGTAAGGAGTTTGATGCATCAAAGAGGTGTGAAGAAGCAGCCTGGCCAATCTTGGATTCAGTTAAAGGATCAAACCCACACGTTTGTCATGGGAGATAGGTCTCACCAACAAGACAAGGAGATATATTCATATCTGGACACTTTAGTAGGAAGGTTGAAGGAGATTGGATATTCCAGTGATGTGAATCCGGTCACGCAGGATGTAGAAGATGAACAAGGGGAAGTACTTATTAGTCATCACAGTGAAAAACTTGCGCTTGTCTTTGGTATCATTAACACTGCCAATAGGACACCAATCCGAATCATGAAAAACCTCCGCATTTGTACCGATTGCCATAACTTCATCAAGTACGCTTCTCAGCTTCTGGAACGTGATATAATTGTGAGAGATTCTCATAGGTTCCATCATTTTAAGTATGGTAGTTGCTCTTGTGGAGATTATTGGTGA 2247 0.4174 MDYRGLGSSCRKYAKLISATNCHIANSSFHFRLRHPCSSHHSTLSYVSSPPPLGALHAQYLKNGSLQTLNSANYILNLYVKSSNLDHAHKLFDEIPHRDTQTWTVLISGFARAGSSEMVFSLFREMQAKGACPNQYTLSSVFKCCSAEKNLQLGKGVHAWMLRNGVDADVVLVNSILDLYLKCKAFEYAERLFELTGEGDVVTWNIMIRAYLGAGDVEKSLDMFRNLPSKDVVSWNTIIDGLIRCGYERRALELLFCMVENGTEFSEVTFSIALILASSLSLVELGKQLHGRVITLALNGDNFINSSLVEMYCKCGRTDKASVILKDVPLNLLRTGNSGGIVPWNSMVSGYVWNGKYEDCLKTFRSMVHELAIVDIRTVTTVISACANAGLLEFGRQMHAYIQKIGHRIDAYVGSSLIHMYSKSGSLDDAWVIFRQINEPNVFLWTSMISGCALHGKGKQASSLFEGMLNQGIVPNEVTFLGVINACSHVGLLEEGSTYFRMMKDVYCINPGVEHCTSMVDLYGRAGCLIETKNFIFENGISHLTSVWKSFLSSCRLHKNIEMGKWVSEMLLQVAPSDPEAYILLSNMCTSNHRWDEAAMVRSLMHQRGVKKQPGQSWIQLKDQTHTFVMGDRSHQQDKEIYSYLDTLVGRLKEIGYSSDVNPVTQDVEDEQGEVLISHHSEKLALVFGIINTANRTPIRIMKNLRICTDCHNFIKYASQLLERDIIVRDSHRFHHFKYGSCSCGDYW* 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3021 748 Gene3D Tetratricopeptide repeat domain 55 149 IPR011990 GO:0005515
Lja1g3021 748 PANTHER OS07G0239600 PROTEIN 55 729 - -
Lja1g3021 748 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 99 133 IPR002885 -
Lja1g3021 748 TIGRFAM PPR: pentatricopeptide repeat domain 444 477 IPR002885 -
Lja1g3021 748 TIGRFAM PPR: pentatricopeptide repeat domain 202 232 IPR002885 -
Lja1g3021 748 TIGRFAM PPR: pentatricopeptide repeat domain 102 134 IPR002885 -
Lja1g3021 748 TIGRFAM PPR: pentatricopeptide repeat domain 344 368 IPR002885 -
Lja1g3021 748 Pfam DYW family of nucleic acid deaminases 656 748 IPR032867 GO:0008270
Lja1g3021 748 Pfam PPR repeat 343 368 IPR002885 -
Lja1g3021 748 Pfam PPR repeat 73 96 IPR002885 -
Lja1g3021 748 Pfam PPR repeat 415 437 IPR002885 -
Lja1g3021 748 Pfam PPR repeat 306 326 IPR002885 -
Lja1g3021 748 PANTHER OS07G0578800 PROTEIN-RELATED 55 729 IPR045215 GO:0003723|GO:0009451
Lja1g3021 748 Pfam E motif 558 620 IPR046848 -
Lja1g3021 748 Gene3D Tetratricopeptide repeat domain 281 413 IPR011990 GO:0005515
Lja1g3021 748 Gene3D Tetratricopeptide repeat domain 150 280 IPR011990 GO:0005515
Lja1g3021 748 Gene3D Tetratricopeptide repeat domain 416 641 IPR011990 GO:0005515
Lja1g3021 748 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 200 234 IPR002885 -
Lja1g3021 748 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 441 475 IPR002885 -
Lja1g3021 748 Pfam PPR repeat family 99 145 IPR002885 -
Lja1g3021 748 Pfam PPR repeat family 440 488 IPR002885 -
Lja1g3021 748 Pfam PPR repeat family 230 273 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3021 Lja-Chr1 36582545 36585158 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3021 75 748 Glycoside Hydrolase AT3G49170 34.068 6.58e-134 415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3021 K23541 - gmx:102664309 1217.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3021 1 36582545 36585158 Lja1g3021 1 36582545 36585158 ECH