Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3020 ATGAGACAAAGAATGGAAAGGCTTGTCATTCTTCCTTTCTCTGCTGGTTGCATCTCTGAGGCCAGTGTTGCTGTAGGTGTTCCCCAGCCAAGAAGATCAAAATCAGACACCAACACACAACAAGATTCAATAAAAGGATCTAAAGGCGTTGAGGATTCAGAGACTTTGTCCGGTGAAAGCATGAAAAACTCGTTGAGGTTCCTTGACGTTGTTCCAAAGCCTAACCTTTCCACCGGTTTCAATAGGCTGTTCAAGGGTTTCAAGAACTTTTCTCAATTGTTTGTGGAGAAAGAAGAGGAGTTGGAAGAACTTGAAATGGACATAGAAATAGGGTGCCCAACAGATGTGCAACATGTGGCACACATTGGTTGGGATGGTATCACAGCTACTGCTGACCCCATCAGCAACAGGGGATGGAACTCTTTCCTTCCTCCTGAGCTGCTCTCTCTATCATCTCAATCTTTAGGGCAGCAAGAGGTCTCTAATTTGGACTCAAAAGATGAAGCATCATCACTCCAGAAGCATCCTAATTAA 534 0.4419 MRQRMERLVILPFSAGCISEASVAVGVPQPRRSKSDTNTQQDSIKGSKGVEDSETLSGESMKNSLRFLDVVPKPNLSTGFNRLFKGFKNFSQLFVEKEEELEELEMDIEIGCPTDVQHVAHIGWDGITATADPISNRGWNSFLPPELLSLSSQSLGQQEVSNLDSKDEASSLQKHPN* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3020 177 ProSiteProfiles CRIB domain profile. 110 123 IPR000095 -
Lja1g3020 177 Coils Coil 87 107 - -
Lja1g3020 177 MobiDBLite consensus disorder prediction 31 46 - -
Lja1g3020 177 MobiDBLite consensus disorder prediction 28 57 - -
Lja1g3020 177 CDD CRIB 108 126 - -
Lja1g3020 177 Gene3D CRIB domain 107 168 IPR036936 -
Lja1g3020 177 PANTHER CRIB DOMAIN-CONTAINING PROTEIN RIC2 1 173 IPR044509 -
Lja1g3020 177 Pfam P21-Rho-binding domain 109 128 IPR000095 -
Lja1g3020 177 PANTHER CRIB DOMAIN-CONTAINING PROTEIN RIC4 1 173 - -
Lja1g3020 177 MobiDBLite consensus disorder prediction 154 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3020 Lja-Chr1 36577842 36580150 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3020 - - gmx:100787187 218.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3020 1 36577842 36580150 Lja1g3020 1 36577842 36580150 ECH