Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2994 ATGGCAGAAAATGCCTTAACTGTGTTGAACAAGCTTGTCTTGTTTTGTTTGCTTCTAATTCAGGTTTCCGTTGCTGAAATCATTTTTGAAGAGCGCTTTGATGATGGATGGCAAAGTCGCTGGGTGAAATCAGACTGGAAAAGCAGTGAAGGAAAAGCTGGTTCATTCAAGCACACGGCTGGAAAATGGGCTGGAGATCCAGATGATAAAGGTATCCAAACATCTACTGATGCCAAACACTTTGCTATCTCTGCAAAGATACCAGAATTCAGCAACAAGAACAGAACATTGGTCCTTCAGTATTCTGTAAAATTTGAGCAAGAAATTGAGTGTGGTGGAGGTTACATAAAGCTCCTCTCTGGATTTGTGAATCAAAAGAAGTTCGGTGGGGATACGCCTTACAGTGTAATGTTTGGACCAGACTTGTGTGGCACAGATGTAAAGAAGCTCCATCTCATACTCTCCTACCAAGGTCAAAATTACCCCGTAAAGAAGGACCTGCAATGTGAAACTGACAAGCTAACTCACTTCTACACATTCATTCTAAGGCCAGATGCCTCATATAGTGTCCTGGTTGATAATAGAGAGCGAGATTCCGGAAGCATGTATACAGATTGGGACATTCTTCCTCCGCGAAAAATCAAAGATGTCAAGGCGAAAAAGCCTGCAGATTGGGATGACAAAGAATACATTGAAGACCCTAATGATGTCAAACCTAAGGGCTATGATTCAATCCCAGCTGAAATTCCTGACCCAAATGCTAAAGAGCCTGATAGTTGGGATGAAGATGAAGATGGAATATGGAAAGCACCAAAGATACCAAATCCTGCATACAAAGGACCGTGGAAAAGAAAGAAAATCAAGAACCCTAACTACAAAGGGAAGTGGAAAGTCCAATGGAAAGATAATCCAGAGTTTGAAGATGACCCTGATCTTTATGTGCTTAAGCCTATCAAGTATGTTGGCATCGAAGTTTGGCAGGTTAAAGGCGGTTCAGTTTTTGACAACTTTTTGATTTGTGATGATCCTGATTATGCAAGAGAAGTTGTTGATGAAGTTTTTGCCAACAGGGAGATTGAAAAGGAGGCTTTTGAGGAAGAAGAGAAAATTAGAAAAGCTAAAGAGGAGGAGGAGGCTCAAAGAGCAAGAGAAGAAGGTGAGAGGAGGAGGAAAGAGAGAGGCCATGACCGACATCACAGGGACAGACACAGAGACAGATATAGAAAGTATCGTCGTGGTTATGATGATCATGATGAACTATGA 1263 0.4165 MAENALTVLNKLVLFCLLLIQVSVAEIIFEERFDDGWQSRWVKSDWKSSEGKAGSFKHTAGKWAGDPDDKGIQTSTDAKHFAISAKIPEFSNKNRTLVLQYSVKFEQEIECGGGYIKLLSGFVNQKKFGGDTPYSVMFGPDLCGTDVKKLHLILSYQGQNYPVKKDLQCETDKLTHFYTFILRPDASYSVLVDNRERDSGSMYTDWDILPPRKIKDVKAKKPADWDDKEYIEDPNDVKPKGYDSIPAEIPDPNAKEPDSWDEDEDGIWKAPKIPNPAYKGPWKRKKIKNPNYKGKWKVQWKDNPEFEDDPDLYVLKPIKYVGIEVWQVKGGSVFDNFLICDDPDYAREVVDEVFANREIEKEAFEEEEKIRKAKEEEEAQRAREEGERRRKERGHDRHHRDRHRDRYRKYRRGYDDHDEL* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2994 420 PIRSF Calreticulin 5 419 IPR009169 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Lja1g2994 420 Gene3D - 26 385 - -
Lja1g2994 420 SUPERFAMILY P-domain of calnexin/calreticulin 207 322 IPR009033 GO:0005509|GO:0005515
Lja1g2994 420 SUPERFAMILY Concanavalin A-like lectins/glucanases 20 224 IPR013320 -
Lja1g2994 420 Coils Coil 356 394 - -
Lja1g2994 420 ProSitePatterns Calreticulin family signature 1. 104 119 IPR018124 GO:0005509
Lja1g2994 420 PRINTS Calreticulin signature 132 148 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Lja1g2994 420 PRINTS Calreticulin signature 106 124 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Lja1g2994 420 PRINTS Calreticulin signature 287 306 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Lja1g2994 420 PRINTS Calreticulin signature 249 271 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Lja1g2994 420 PRINTS Calreticulin signature 320 340 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Lja1g2994 420 PRINTS Calreticulin signature 221 234 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Lja1g2994 420 MobiDBLite consensus disorder prediction 393 407 - -
Lja1g2994 420 MobiDBLite consensus disorder prediction 49 69 - -
Lja1g2994 420 MobiDBLite consensus disorder prediction 364 392 - -
Lja1g2994 420 ProSitePatterns Calreticulin family signature 2. 136 144 IPR018124 GO:0005509
Lja1g2994 420 PANTHER OS01G0895600 PROTEIN 9 404 - -
Lja1g2994 420 Gene3D Calreticulin/calnexin, P domain 211 312 IPR009033 GO:0005509|GO:0005515
Lja1g2994 420 MobiDBLite consensus disorder prediction 364 420 - -
Lja1g2994 420 MobiDBLite consensus disorder prediction 225 239 - -
Lja1g2994 420 MobiDBLite consensus disorder prediction 225 271 - -
Lja1g2994 420 Pfam Calreticulin family 29 265 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Lja1g2994 420 Pfam Calreticulin family 266 339 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Lja1g2994 420 PANTHER CALRETICULIN AND CALNEXIN 9 404 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2994 Lja-Chr1 36357474 36363166 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2994 14 342 Miscellaneous Gene Families AT5G61790 34.961 5.88e-60 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2994 K08057 - gmx:100801827 692.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2994 1 36357474 36363166 Lja1g2994 1 36357474 36363166 ECH