Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2991 ATGATATCGCTGAACCCTATATTGTTGCTGTTAATTTCCGTGTTCCTTTTCATATTCTTCCTATTCAAATTCGTCACCGCTTATGGCGACTTCACTTTGATGTCTAAGAAGCAACCAAAACGTGAAGAAATTGAAGATAAGGTTGTCTGGATTACTGGTGCAAGCCGTGGAATTGGGGAGATTCTAGCTAAACAGCTTGCAAGTTTAGGGGCCAAGCTAATAATCTCTGCAAGGAATGAAGATGATCTAATCCGAGTAAGGACACAGCTGAAAGGTAAGCATGCACCTGATGGAGTCAAGGTTTTACCATTGGATTTATCGTCTGGAGAGGATTCTCTTAGGCAGGCTGTTGAGAAAGCAGAATCCTTTTTTCCGGATTCTGGTGTTGATTATATGATCCATAATGCAGCTCATGAGCGTCCTAAAACATCAGTTTTAGATGTAACTGAGGAAGGTCTTAAGGCAACATTTGATGTCAATGTTCTGGGGACAATAACTCTGACAAGGCTCTTGGCACCTTTCATGTTGAAGAGGGGGAGAGGTCATTTTGTGGTGATGAGTAGTGCAGCAGGAAAGACACCAGCCCCAGGTCAGGCTGTATATTCTGCTTCTAAATATGCCCTAAACGGGTACTTCCATTCTTTGCGTTCAGAGCTCTGTCGGAAAGGAATCCAGGTCACTGTTGTCTGTCCTGGTCCGATAGAAACATCAAATAATGCTGGATCCAATGTTCCATCTGAGAGGCGTGTCTCATCGGAAAAGTGTGCAGAGCTGACTATTATTGCTGCAACCCATGGCTTAAAGGAAGTTTGGATATCAAATCAGCCTGTGCTTGTTGTCATGTATCTTGTTCAGTACATGCCAACTATTGGTTATTGGCTCATGGACAAGGTTGGCCAAAATCGAGTGGAAGCTGCTGCTAACAAGGGAAGCACTTATTCTTTGAGCCTTCTGCTTGGTAAAAAGAAGGCAGCATAA 978 0.4335 MISLNPILLLLISVFLFIFFLFKFVTAYGDFTLMSKKQPKREEIEDKVVWITGASRGIGEILAKQLASLGAKLIISARNEDDLIRVRTQLKGKHAPDGVKVLPLDLSSGEDSLRQAVEKAESFFPDSGVDYMIHNAAHERPKTSVLDVTEEGLKATFDVNVLGTITLTRLLAPFMLKRGRGHFVVMSSAAGKTPAPGQAVYSASKYALNGYFHSLRSELCRKGIQVTVVCPGPIETSNNAGSNVPSERRVSSEKCAELTIIAATHGLKEVWISNQPVLVVMYLVQYMPTIGYWLMDKVGQNRVEAAANKGSTYSLSLLLGKKKAA* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2991 325 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 44 295 IPR036291 -
Lja1g2991 325 Gene3D - 29 304 - -
Lja1g2991 325 PRINTS Glucose/ribitol dehydrogenase family signature 48 65 IPR002347 -
Lja1g2991 325 PRINTS Glucose/ribitol dehydrogenase family signature 127 138 IPR002347 -
Lja1g2991 325 PRINTS Glucose/ribitol dehydrogenase family signature 222 239 IPR002347 -
Lja1g2991 325 PRINTS Glucose/ribitol dehydrogenase family signature 201 220 IPR002347 -
Lja1g2991 325 PRINTS Glucose/ribitol dehydrogenase family signature 175 191 IPR002347 -
Lja1g2991 325 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN 8 324 - -
Lja1g2991 325 Pfam short chain dehydrogenase 47 241 IPR002347 -
Lja1g2991 325 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 188 216 IPR020904 GO:0016491
Lja1g2991 325 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 47 237 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2991 7 231 Lipid Metabolism Gene Families AT1G67730 31.034 1.03e-18 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2991 K11165 - gmx:100795991 521.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2991 1 36341511 36346430 Lja1g2991 1 36341511 36346430 ECH