Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2990 ATGGAGGTTGTTACGCAGCCTCTGTGCACCACCACCACCGCCGCCATTGTAACCGCCAAAAGCTTCAGGCGTAAACAACCACTTCTCATTCCTCAAAACCCCACTTATCCTTCAAAGCATTTTCCCTTCCGCACCACACTTTCTTCTCCTTCCCGTTTTCCTCCACCACCTGTTGTGTCTGCCGCGCCGGAGAACCAGTTGAGCGTTGGGGAAGGGGAGGATACTGATACAACTGAATGGGCACTTCAAGCTTTTTATTCCCTGAGGAAGGATGTTGAAATTACGTCTCAGCGTGTTGAAGAAATAAGAGAATCTTCTGGTATACAACTATTGGAGCAAGAGCTTGCCAATTTGGAGGAGAAAGCATCTGCTACCTCCTTTTGGGACAATCGAGCCAAAGCTCAAGAGACTCTTTCGACATTGTCTGATGTCAAAGATAAGATTAACTTGCTTGCTGAGTTCAAAACCCAGGTTGAGGATGCAGAAACAATAGTTAAGCTGACCGAGGAAATGGAATCATCCATTGATAGAGCGCTTCTTGAGGAGGCTACTAGTCTTATTAAAGAACTGAATAAATCACTAGATCGATTTGAGCTGACTCAACTTCTTTCTGGACCTTATGATAAAGAAGGTGCTGTTATTTCTATTACAGCGGGTGCTGGAGGTACTGATGCACAGGATTGGGCGGACATGCTTCTTAGGATGTACATGAGATGGGGTGAGAAACAGAGATACAAAACCAGAGTGGTTGAGAGATCCCCCGGAGAAGAAGCTGGAATTAAATCTGCCACCATTGAGGTTGAAGGCCGTTATGCTTATGGGTATTTGTCTGGGGAGAAAGGAACACATCGCATTGTTCGGCAATCTCCTTTTAATTCCAAAGGTCTCCGTCAGACGAGCTTTTCTGGTGTTGAGGTCATGCCTCTTCTTCCAGAAGAATCTCTGGATGTTGAAATCCCTGAGGAGGACCTGGAAATTAGTTTTTCCCGAGCAGGTGGAAAAGGAGGTCAGAATGTGAACAAGGTTGAAACTGCAGTCCGAATTACACACATCCCAACCGGTGTCACTCTTCGCTGCACAGAGGAGAGATCCCAACTAGCCAATAAGATCAAGGCTCTAAGCCGTCTGAAAGCGAAGCTGTTGGTGATAGCTGAAGAGCAACGTGCGTCTGAAATTAAGCAGATTCGGGGGGATGCAGTGAAGGCTGAATGGGGACAACAAATACGGAACTATGTATTCCATCCCTACAAACTAGTAAAAGATGTAAGAACAGGGCATGAAACGCCAGATGTCACCTCTGTTATGGACGGCGAGTTGGACCCCTTCATCAAATCTTACCTCAAACACAAGTTCAGCATGACAATGTCTACAAGTGGTGTCAACTAA 1386 0.4603 MEVVTQPLCTTTTAAIVTAKSFRRKQPLLIPQNPTYPSKHFPFRTTLSSPSRFPPPPVVSAAPENQLSVGEGEDTDTTEWALQAFYSLRKDVEITSQRVEEIRESSGIQLLEQELANLEEKASATSFWDNRAKAQETLSTLSDVKDKINLLAEFKTQVEDAETIVKLTEEMESSIDRALLEEATSLIKELNKSLDRFELTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYMRWGEKQRYKTRVVERSPGEEAGIKSATIEVEGRYAYGYLSGEKGTHRIVRQSPFNSKGLRQTSFSGVEVMPLLPEESLDVEIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTLRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGHETPDVTSVMDGELDPFIKSYLKHKFSMTMSTSGVN* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2990 461 Pfam RF-1 domain 314 423 IPR000352 GO:0003747|GO:0006415
Lja1g2990 461 Gene3D Release factor 91 207 - -
Lja1g2990 461 SMART PCRF_a_2 166 279 IPR005139 GO:0006415
Lja1g2990 461 SUPERFAMILY Release factor 111 450 IPR045853 -
Lja1g2990 461 Gene3D - 214 444 - -
Lja1g2990 461 Coils Coil 151 171 - -
Lja1g2990 461 Gene3D - 310 406 - -
Lja1g2990 461 PANTHER PEPTIDE CHAIN RELEASE FACTOR 2 63 456 - -
Lja1g2990 461 Coils Coil 180 200 - -
Lja1g2990 461 TIGRFAM prfB: peptide chain release factor 2 87 450 IPR004374 GO:0005737|GO:0006415|GO:0016149
Lja1g2990 461 ProSitePatterns Prokaryotic-type class I peptide chain release factors signature. 330 346 IPR000352 GO:0003747|GO:0006415
Lja1g2990 461 PANTHER PEPTIDE CHAIN RELEASE FACTOR PRFB1, CHLOROPLASTIC-RELATED 63 456 - -
Lja1g2990 461 Pfam PCRF domain 111 304 IPR005139 GO:0006415
Lja1g2990 461 Hamap Peptide chain release factor 2 [prfB]. 84 451 IPR004374 GO:0005737|GO:0006415|GO:0016149
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2990 Lja-Chr1 36335186 36340816 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2990 K02836 - gmx:100775574 749.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2990 1 36335186 36340816 Lja1g2990 1 36335186 36340816 ECH