Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2416 ATGAGTTCAGCTGTTCTTGTTGCTGTTGCTGCTGCTATTGGTAACTTACTTCAAGGATGGGATAATGCCACTATTGCAGGATCTATTTTATACATTAAGAGGGAGTTTCAATTAGAAAGTCAGCCCACAGTGGAAGGTCTTATTGTGGCTATGTCACTTATTGGGGCAACCGTCGTTACTACATTCTCCGGAGCGCTATCGGACTTGCTAGGCCGGCGTCCCATGTTGATTATCTCCTCTGTCCTTTATTTTCTTAGTTCTCTTGTCATGCTATGGTCTCCAAATGTTTATATCCTCCTCTTTGCAAGACTTTTAGATGGATTGGGGATTGGTTTGGCAGTTACCTTGGTACCTCTTTACATATCTGAGATAGCTCCTCCTGAGATTAGGGGATTACTCAATACACTTCCACAGTTCACTGGTTCTGCTGGAATGTTTTTCTCCTACTGTATGGTCTTTGGGATGTCACTCACCAAGGCGCCTAGCTGGAGGCTCATGTTGGGTGTTCTTTCAATCCCCTCTCTTATTTATTTTGGATTCACACTATTCTTCTTGCCCGAGTCTCCAAGATGGCTTGTCAGTAAAGGTCGTATGCTTCAGGCTAAGAAGGTTTTGCAGCGCCTTCGTGGAAGGGAAGATGTTTCTGGTGAGATGGCTTTATTGGTTGAGGGTCTTGGAGTAGGGGGTGATACAGCCATCGAAGAATACATAATTGGTCCTGCCAATGAATTTACTGATGAAGAGGATCCATCTGCAGGTAAAGATCAGATCAAGTTGTATGGGCACGAACGAGGTCAGTCCTGGGTTGCCAAACCTGCTCAGAGTTCCATTGGCCTTATGTCTCGGAAAGGAAGCATGGCAAATCAGAGACAGGGTAGTCTAGCGGTGGATCCTTTAGTCACCCTTTTTGGTAGTGTCCATGAGAAGCTCCCGGAGACAGGAAGCATGACCCTTTTTCCACACTTCGGAAGCATGTTTAGTGTTGGGGGAAATCAGACGAGGAATGAAGAATGGGATGAAGAAAGCCTTAGAGAGGGTGATGATGATGTCTCTGATGCTGCTGCTGGTGATTCTGATGACAATTTGCAGAGCCCGTTGATCTCACGTCAAGCAACAAGTATTGATAAGGACATACCTCCTGCTGCTCATGATAGCCTTTCGAGCATGAGGCAAGGTAGTCTTTTACAAGGAAATGCAGGAGAACCTGCTGGTAGTACTGAGATTGGTGGTGGTTGGCAACTAGCGTGGAAATGGTCTGAACGAGAAGGCTCAGATGGAAAGAAGGAAGGTGGTTATAAGAGAATATATTTACACCAAGAGGGTGGTCCTGGATCTAGACGTGGGTCTGTGGTTTCACTTCCTGGTGATGTGCCAACAGATCATGGTGAGGTCATACAAGTTGCTGCTCTAGTGAGTCAACCAGCCCTTTATAATAAGGAGCTTATGCATCAACAACCAGTGGGACCAGCTATGATTCATCCATCTGAAACAACTGCAAAAGGGCCAAGTTGGAGTGATCTTTTTGAACCTGGTGTTAAGCATGCACTAATTGTCGGGGTGGGACTTCAAATTCTTCAGCAGTTCTCAGGTATCAATGGTGTCCTGTACTATACACCTCAAATTCTTGAGCAGGCAGGTGTTGGTTATCTTCTTTCAAACCTGGGCCTTGGTTCAACTTCTTCATCTTTTCTTATAAGTGCTTTGACAACATTGTTGATGCTTCCTTGTATAGCTGTTGCCATGAGGCTCATGGATATTTCTGGCAGAAGGACTTTGCTGCTGAGTACTATCCCAGTCTTGATAGCATCTCTTCTCATATTAGTCCTAGGGAGCCTTGTGGATTTGGGCAGTACGGTAAATGCATCAATCGCAACTATTAGCGTTGTTGTCTATTTCTGTTCCTTTGTCATGGGTTTTGGGCCAGTACCTAATATACTTTGTGCTGAGATTTTCCCCACTCGAGTTCGTGGTCTCTGCATTGCCATATGTGCTCTAACCTTTTGGATCAGTGACATCATTGTCACCTACACACTCCCAGTTATGCTTAACTCTGTTGGCCTCGCTGGTGTTTTTGGTATGTACGCAATCGTGTGTTGCATAGCTTGGGTGTTTGTCTTTCTCAAAGTTCCGGAAACTAAGGGCATGCCACTAGAAGTTATCATTGAGTTCTTCTCCGTCGGAGCTAAACAGATTGACGCTGCCCAGCATAACTAA 2214 0.4517 MSSAVLVAVAAAIGNLLQGWDNATIAGSILYIKREFQLESQPTVEGLIVAMSLIGATVVTTFSGALSDLLGRRPMLIISSVLYFLSSLVMLWSPNVYILLFARLLDGLGIGLAVTLVPLYISEIAPPEIRGLLNTLPQFTGSAGMFFSYCMVFGMSLTKAPSWRLMLGVLSIPSLIYFGFTLFFLPESPRWLVSKGRMLQAKKVLQRLRGREDVSGEMALLVEGLGVGGDTAIEEYIIGPANEFTDEEDPSAGKDQIKLYGHERGQSWVAKPAQSSIGLMSRKGSMANQRQGSLAVDPLVTLFGSVHEKLPETGSMTLFPHFGSMFSVGGNQTRNEEWDEESLREGDDDVSDAAAGDSDDNLQSPLISRQATSIDKDIPPAAHDSLSSMRQGSLLQGNAGEPAGSTEIGGGWQLAWKWSEREGSDGKKEGGYKRIYLHQEGGPGSRRGSVVSLPGDVPTDHGEVIQVAALVSQPALYNKELMHQQPVGPAMIHPSETTAKGPSWSDLFEPGVKHALIVGVGLQILQQFSGINGVLYYTPQILEQAGVGYLLSNLGLGSTSSSFLISALTTLLMLPCIAVAMRLMDISGRRTLLLSTIPVLIASLLILVLGSLVDLGSTVNASIATISVVVYFCSFVMGFGPVPNILCAEIFPTRVRGLCIAICALTFWISDIIVTYTLPVMLNSVGLAGVFGMYAIVCCIAWVFVFLKVPETKGMPLEVIIEFFSVGAKQIDAAQHN* 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2416 737 ProSitePatterns Sugar transport proteins signature 1. 63 80 IPR005829 GO:0016021|GO:0022857|GO:0055085
Lja1g2416 737 Gene3D MFS general substrate transporter like domains 477 726 IPR036259 -
Lja1g2416 737 MobiDBLite consensus disorder prediction 330 408 - -
Lja1g2416 737 SUPERFAMILY MFS general substrate transporter 6 718 IPR036259 -
Lja1g2416 737 ProSiteProfiles Major facilitator superfamily (MFS) profile. 7 713 IPR020846 GO:0022857
Lja1g2416 737 Pfam Sugar (and other) transporter 499 721 IPR005828 GO:0016021|GO:0022857|GO:0055085
Lja1g2416 737 Pfam Sugar (and other) transporter 7 221 IPR005828 GO:0016021|GO:0022857|GO:0055085
Lja1g2416 737 CDD MFS_GLUT_like 514 711 - -
Lja1g2416 737 MobiDBLite consensus disorder prediction 386 400 - -
Lja1g2416 737 CDD MFS_GLUT_like 13 210 - -
Lja1g2416 737 PANTHER TONOPLAST MONOSACCHARIDE TRANSPORTER 2 1 730 - -
Lja1g2416 737 PANTHER - 1 730 - -
Lja1g2416 737 MobiDBLite consensus disorder prediction 357 371 - -
Lja1g2416 737 MobiDBLite consensus disorder prediction 341 355 - -
Lja1g2416 737 ProSitePatterns Sugar transport proteins signature 2. 105 130 IPR005829 GO:0016021|GO:0022857|GO:0055085
Lja1g2416 737 Gene3D MFS general substrate transporter like domains 2 262 IPR036259 -
Lja1g2416 737 PRINTS Sugar transporter signature 100 119 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lja1g2416 737 PRINTS Sugar transporter signature 526 536 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lja1g2416 737 PRINTS Sugar transporter signature 648 660 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lja1g2416 737 PRINTS Sugar transporter signature 15 25 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lja1g2416 737 PRINTS Sugar transporter signature 625 646 IPR003663 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2416 Lja-Chr1 27847542 27852800 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2416 1 737 Organic Solute Cotransporters AT4G35300 72.776 0.0 1023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2416 - - mtr:MTR_3g118530 1218.76