Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2412 ATGGATGAAATGGAGAAAAAGGCAGTGCTCCGGGAGTGGTTCGACCGAGTTGACTCGGAGAAAACTGGAAGCATAACAGCGCCCCAACTCAAGACGGCCCTGGCCGTGGGCAACCTCGAGTTTCCGCTCTCAGTTGTTCAGCAGATGATCAGGATGTGCGACTTTGATAGGAATGGTACCATGAGCTTTCAAGAATTTGTTGCTCTCAACACCTTCCTTCTTAAGGTTCAGCATGCATTTTCTGATCTAGAGAGGGGTCGTGGTTTTCTTGTACCTGATGATGTATTTGAGGCTTTGGTAAAAATTGGTTTCATGCTGGATTCTCCTGCTTTCTACTCTGTCTGTGAGAGCTTTGATCAAAGTAAAAATGGGAGGCTTCGGCTGGACGACTTCATATCGCTCTGTATATTCTTACAATCAGCTCGGAATCTGTTTAATTCATTTGACGCAGCGAAACAAGGCCGAGTTACACTTGATCTGAATCAGTTTGTCTATTGCACTGCCAATTGTAGAATATGA 519 0.4509 MDEMEKKAVLREWFDRVDSEKTGSITAPQLKTALAVGNLEFPLSVVQQMIRMCDFDRNGTMSFQEFVALNTFLLKVQHAFSDLERGRGFLVPDDVFEALVKIGFMLDSPAFYSVCESFDQSKNGRLRLDDFISLCIFLQSARNLFNSFDAAKQGRVTLDLNQFVYCTANCRI* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2412 172 SMART efh_1 9 37 IPR002048 GO:0005509
Lja1g2412 172 SMART efh_1 45 73 IPR002048 GO:0005509
Lja1g2412 172 Pfam EF-hand domain pair 22 69 IPR002048 GO:0005509
Lja1g2412 172 ProSiteProfiles EF-hand calcium-binding domain profile. 5 40 IPR002048 GO:0005509
Lja1g2412 172 ProSitePatterns EF-hand calcium-binding domain. 54 66 IPR018247 -
Lja1g2412 172 ProSiteProfiles EF-hand calcium-binding domain profile. 41 76 IPR002048 GO:0005509
Lja1g2412 172 SUPERFAMILY EF-hand 5 168 IPR011992 -
Lja1g2412 172 Gene3D - 1 170 - -
Lja1g2412 172 CDD EFh_PEF_ALG-2_like 9 170 - -
Lja1g2412 172 PANTHER PEFLIN 7 168 - -
Lja1g2412 172 PANTHER PEFLIN 7 168 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2412 5 134 EF-hand Containing Proteins AT3G10660 26.277 3.54e-12 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2412 - - gmx:100792880 313.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2412 1 27827211 27831127 Lja1g2412 1 27827211 27831127 ECH