Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2408 ATGATCAAAATGAAGATGAGGTTGGGAATAGCAATACTGGTGTCGTTTATACTAGTAGGATGGTGCAGGGGAGAGCAATGCGGAAGCCAAGCAGGGGGTGCTCTGTGTCCCGGTGGGATATGTTGCAGCAAATACGGGTGGTGCGGTTCAACTTCTGAGTACTGCGGCGAAGGTTGCCAGAGTCAATGTGGTGGCAGTACCGGTGGTGGTGACCTTGGGAGCATCATCTCAAGGGACACCTTCAACACGATGCTCAAGCATCGTGATGATGGAGGGTGTCCAGCTAAAGGGTTTTACACCTATGATGCTTTTATTTCAGCTGCCAAGGCTTACCCCAGCTTTGGTACCACCGGCGATACCTCCACTCGCAAAAGAGAAATTGCTGCTTTCTTCGGCCAAACTTCTCATGAAACTACTGGGGGTTGGGCTACTGCACCGGATGGCCCTTACGCTTGGGGATATTGCTTTGTTAGGGAACAAAACCCAAGTGCCTATTGCTCCCCAAGTTCTCAATGGCCTTGTGCTTCTGGCAAGCAATACTATGGTCGCGGTCCAATCCAAATCACATGGAACTACAACTATGGGCAATGCGGAAGAGCAATTGGTGCGGACTTGCTGAACAACCCAGATGCTGTAGCAACTGACGCAGTGATCTCATTCAAGACAGCGATCTGGTTCTGGATGACGGCACAATCACCGAAGCCTTCATGCCACGACGTCATCACCGGAAGATGGAGTCCATCAAGTGCTGATCAGGCAGCAGGGAGGGTTTCCGGGTACGGCACTGTCACCAACATCATCAACGGTGGACTTGAATGCGGGAAAGGGCAGGATAGCAGGGTGCAGGATCGCATAGGGTTTTATAAGAGATACTGTGACTTGCTTGGAGTTGGGTATGGCAATAACCTTGACTGTGCTTCTCAGAGACCATTTGGCTCTAATTCACAGCTCCTTCTCGACACCATCTAG 969 0.5088 MIKMKMRLGIAILVSFILVGWCRGEQCGSQAGGALCPGGICCSKYGWCGSTSEYCGEGCQSQCGGSTGGGDLGSIISRDTFNTMLKHRDDGGCPAKGFYTYDAFISAAKAYPSFGTTGDTSTRKREIAAFFGQTSHETTGGWATAPDGPYAWGYCFVREQNPSAYCSPSSQWPCASGKQYYGRGPIQITWNYNYGQCGRAIGADLLNNPDAVATDAVISFKTAIWFWMTAQSPKPSCHDVITGRWSPSSADQAAGRVSGYGTVTNIINGGLECGKGQDSRVQDRIGFYKRYCDLLGVGYGNNLDCASQRPFGSNSQLLLDTI* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2408 322 PANTHER BASIC ENDOCHITINASE B 12 316 - -
Lja1g2408 322 PANTHER CHITINASE-RELATED 12 316 - -
Lja1g2408 322 ProSitePatterns Chitin recognition or binding domain signature. 36 55 IPR018371 GO:0008061
Lja1g2408 322 SUPERFAMILY Plant lectins/antimicrobial peptides 26 65 IPR036861 GO:0008061
Lja1g2408 322 Gene3D - 24 66 IPR036861 GO:0008061
Lja1g2408 322 SUPERFAMILY Lysozyme-like 72 312 IPR023346 -
Lja1g2408 322 ProSitePatterns Chitinases family 19 signature 2. 218 228 IPR000726 GO:0004568|GO:0006032|GO:0016998
Lja1g2408 322 Gene3D Endochitinase, domain 2 158 214 - -
Lja1g2408 322 PRINTS Chitin-binding domain signature 34 42 IPR001002 GO:0008061
Lja1g2408 322 PRINTS Chitin-binding domain signature 49 56 IPR001002 GO:0008061
Lja1g2408 322 PRINTS Chitin-binding domain signature 42 49 IPR001002 GO:0008061
Lja1g2408 322 CDD ChtBD1_GH19_hevein 25 63 - -
Lja1g2408 322 SMART ChitinBD_3 26 63 IPR001002 GO:0008061
Lja1g2408 322 PIRSF Endochitinase 2 312 IPR016283 GO:0004568|GO:0005975
Lja1g2408 322 Gene3D - 75 306 - -
Lja1g2408 322 Pfam Chitinase class I 75 305 IPR000726 GO:0004568|GO:0006032|GO:0016998
Lja1g2408 322 Pfam Chitin recognition protein 26 63 IPR001002 GO:0008061
Lja1g2408 322 ProSitePatterns Chitinases family 19 signature 1. 93 115 IPR000726 GO:0004568|GO:0006032|GO:0016998
Lja1g2408 322 ProSiteProfiles Chitin-binding type-1 domain profile. 24 65 IPR001002 GO:0008061
Lja1g2408 322 CDD chitinase_GH19 76 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2408 Lja-Chr1 27803779 27805185 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2408 25 311 Glycoside Hydrolase AT3G12500 71.672 1.72e-159 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2408 K20547 - egr:104419011 511.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2408 1 27803779 27805185 Lja1g2408 1 27803779 27805185 ECH