Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2406 ATGGAAGGTTTAGCGTTTCAACTGTTGCACATTCCAAAACTTGCTCTTCTTCCGACCACTCTTACTTCTTCTTCTTCTTCTTCTTTTGGATTTCTCTCGCCCAAACAACAAATACTACTACTACCTCGACCTCGACATCGTTTTCGCTTTCGCTTTCGCACATCATCGAATTCGCAGGCACAGTCCCTTCCTGAAGAACAAGAACAAGAACAAGAAGAGTTGCTCACAGTGAGTGGAGATTCCATTCGTGACAGGTTTCTCCGTTTCTATGCTTCCCGTGGTCACAAGGTTCTTCCCAGTGCTTCTCTCATCCCAGATGATCCCACCGTCCTCCTCACTATCGCTGGCATGCTTCAGTTCAAGCCTATCTTCCTAGGCAAGATTCCCAGGCAAGTATCTCGTGCTACTACTTCTCAAAGGTGCATACGTACTAACGATATCAACAACGTTGGCCTTACTTCTCGACATCAAACCTTTTTTGAGATGCTTGGTAACTTCAGCTTTGGTGATTACTTCAAAAAACAAGCTATTCAATGGGCATGGGAGCTCTCTACCTTAGAGTTTGGTCTCCCACCAGACAGATTATGGATTAGTGTTTATGAAAATGATGATGAGGCTTTTCACCTCTGGTCTCATGAGGTCGGTGTCCCCGTTGAGCGTATAAAGAGGTTGGGTGAAGAGGACAACTTCTGGACTAGTGGAGTTACAGGTCCCTGTGGCCCTTGCTCAGAAATTTATTATGATTTTCATCCTGAGAGGGGATACATGGATGCTGATCTTGGTGACGATACCAGATTTATAGAGTTCTACAATCTAGTATTCATGCAATACAACAAAAAAGATGATGGTTCTCTTGAACCTCTAAAGCAGAAGAACATAGATACTGGACTTGGATTGGAGCGTATGGCTCGCATTCTTCAAAAGGTTCCCAACAATTATGAAACTGACTTGATTTTCCCCATCATAGAGAAGGCCTCTGAATTGGCAAATGTTTCGTATAGCATTTCTGATGATCTTACAAAGAGAAATCTGAAAATTATAGGAGATCACATGCGTGCAATTGTGTTTCTCATCTCTGATGGTGTTGTCCCATCAAATGTGGGGAGAGGTTATGTTGTTCGGCGGCTTATCAGAAGGCTTGTTCGTACAGGCAGGTTGCTTGGTATAAAGGGTGATGGTAAAGGAGACCCTGAAGGAGCATTTGTACCTATTATTGCTGAGAAAGTAGTGGAGTTGAGTACACACATTGATGCTGATGTGAAAAACAGATCACCCCGTATCCTTGAGGAGTTAAAGAGAGAAGAGCTTCGGTTTGTGCAGACCCTAGAGAGAGGAGAGAAGTTGCTTGAGGAGAAGCTTGCTGGTGCTTTATCAAGTGCCGGAAGAAATGGAACTGTACCTTGCCTAGCTGGTGAAGATGTGTTCCTTTTGTACGATACTTATGGATTCCCAATGGAGATCACAAAAGAAGTGGCTGAAGAACGTGGCGTGAGTATTGATATGAATGGCTTTGAGATGGAGATGGATAAGCAAAGGCGTCAATCTCAAGCTGCACATAATACTGTCAAACTTTCCATTGGAAATGGGGCAAATATTGCAGAAAATGTACCTGACACTGAATTTATTGGGTATGACAGTCTTTATTGTAAAGCAATTGTAGAAAGCCTGGTGGTAAATGGTGATCCAGCTGTGCAGGTTAGTGAAGGGAGTAATGTGGAAATTTTGCTGAACAAGACTCCATTTTATGCTGAATCAGGGGGACAAATTGGAGATCATGGTTTTCTATATATTTCAGGGGATGAGAATCAACAAAAAGCTGTTGTAGAGATAATAGATGTTCAGAAATCTTTAGGTAACATATTTGTTCACAAGGGTACAGTCCGAAAGGGTGTTGTGGAGGTTGGAATAGAAGTGGAAGCAGCAGTGGATGTAAAGCTGAGGCACCGTGCTAAGGTTCATCATACTGCTACTCATTTACTACAAGCTGCTCTTAAAAAAGTCATTGGTCAGGAGACCTCGCAAGCTGGTTCTTTGGTGGCATTTGATCGTCTGAGATTTGATTTCAACTTCCACCGACCACTTCTCGACAGTGAGCTTGCAGAAATAGAAGTGCTGATCAATGGATGGATTGAGGATGCGGTACTTCTTCAAACTAAAGTGATGCCTCTTAGTGATGCAAAAAGAGCTGGAGCTATTGCAATGTTTGGAGAAAAATATGGAGAAGAGGTACGTGTTGTAGACGTTCCTGGTGTATCACTTGAACTTTGTGGAGGGACTCATGTCGGTAATACTTCTGAAATTCGTGGTTTTAAAATAATCTCAGAGCAGGGTATTGCATCTGGAATAAGGCGTATAGAAGCTGTAGCTGGGGAAGCTTGCATTGAATATGTCAATTCTCGAGATTTTTATCTCAAGCAACTATGTTCCACTCTCAAAGTTAAACCTGAAGAGGTAACGGCAAGGATAGAAAACCTTTTAGAGGAGTTGCGTATAGCAAGAAATGAAATTTCTGCTATGCGTGCAAAAGCAGCAGTCTACAAAGCTTCGGCTATTGCAAGCAAGGCATTGTTGATCGGGAATTCAAAACAGTACAGAGTACTAGTTGAGTGTTTGGATGATGTGGATGCTGAGTCACTTAAAAGTGCCGCAGAATATCTAGTGGAAACACTAACAGATCCAGCAGCTGTTGTACTGGGCTCATGTCCAGGTGAAGGGAAGGTTAGTCTAGTGGCTGCTTTTACTCCAGGGGTGGTTGATCGAGGGATTCAGGCAGGTAAGTTTATTGGGCAAATAGCAAAGTTATGTGGTGGCGGCGGAGGTGGAAGGCCTAATTTTGCTCAGGCTGGTGGGAGGAAGCCTGAAAACTTGACCAGTGCTCTCGAGAAGGCAAAATCCGAGCTGATAGCTACTCTATCTGAAAAATGA 2925 0.4315 MEGLAFQLLHIPKLALLPTTLTSSSSSSFGFLSPKQQILLLPRPRHRFRFRFRTSSNSQAQSLPEEQEQEQEELLTVSGDSIRDRFLRFYASRGHKVLPSASLIPDDPTVLLTIAGMLQFKPIFLGKIPRQVSRATTSQRCIRTNDINNVGLTSRHQTFFEMLGNFSFGDYFKKQAIQWAWELSTLEFGLPPDRLWISVYENDDEAFHLWSHEVGVPVERIKRLGEEDNFWTSGVTGPCGPCSEIYYDFHPERGYMDADLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERMARILQKVPNNYETDLIFPIIEKASELANVSYSISDDLTKRNLKIIGDHMRAIVFLISDGVVPSNVGRGYVVRRLIRRLVRTGRLLGIKGDGKGDPEGAFVPIIAEKVVELSTHIDADVKNRSPRILEELKREELRFVQTLERGEKLLEEKLAGALSSAGRNGTVPCLAGEDVFLLYDTYGFPMEITKEVAEERGVSIDMNGFEMEMDKQRRQSQAAHNTVKLSIGNGANIAENVPDTEFIGYDSLYCKAIVESLVVNGDPAVQVSEGSNVEILLNKTPFYAESGGQIGDHGFLYISGDENQQKAVVEIIDVQKSLGNIFVHKGTVRKGVVEVGIEVEAAVDVKLRHRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDSELAEIEVLINGWIEDAVLLQTKVMPLSDAKRAGAIAMFGEKYGEEVRVVDVPGVSLELCGGTHVGNTSEIRGFKIISEQGIASGIRRIEAVAGEACIEYVNSRDFYLKQLCSTLKVKPEEVTARIENLLEELRIARNEISAMRAKAAVYKASAIASKALLIGNSKQYRVLVECLDDVDAESLKSAAEYLVETLTDPAAVVLGSCPGEGKVSLVAAFTPGVVDRGIQAGKFIGQIAKLCGGGGGGRPNFAQAGGRKPENLTSALEKAKSELIATLSEK* 975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2406 974 Gene3D - 859 967 - -
Lja1g2406 974 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 314 522 IPR018162 GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419
Lja1g2406 974 Gene3D Bira Bifunctional Protein; Domain 2 77 310 IPR045864 -
Lja1g2406 974 Gene3D - 790 851 - -
Lja1g2406 974 SUPERFAMILY Translation proteins 537 642 IPR009000 -
Lja1g2406 974 PRINTS Alanyl-tRNA synthetase signature 345 361 IPR002318 GO:0000166|GO:0005737
Lja1g2406 974 PRINTS Alanyl-tRNA synthetase signature 294 307 IPR002318 GO:0000166|GO:0005737
Lja1g2406 974 PRINTS Alanyl-tRNA synthetase signature 267 278 IPR002318 GO:0000166|GO:0005737
Lja1g2406 974 PRINTS Alanyl-tRNA synthetase signature 145 156 IPR002318 GO:0000166|GO:0005737
Lja1g2406 974 PRINTS Alanyl-tRNA synthetase signature 369 382 IPR002318 GO:0000166|GO:0005737
Lja1g2406 974 SUPERFAMILY ThrRS/AlaRS common domain 642 800 IPR018163 GO:0000166
Lja1g2406 974 Gene3D - 529 642 - -
Lja1g2406 974 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 77 799 IPR018165 GO:0003676|GO:0004813|GO:0005524|GO:0006419
Lja1g2406 974 SUPERFAMILY Class II aaRS and biotin synthetases 79 313 IPR045864 -
Lja1g2406 974 CDD AlaRS_core 80 309 - -
Lja1g2406 974 Hamap Probable alanine--tRNA ligase, chloroplastic. 69 973 IPR027522 GO:0009507
Lja1g2406 974 Gene3D - 714 767 - -
Lja1g2406 974 Gene3D - 653 788 - -
Lja1g2406 974 Pfam tRNA synthetases class II (A) 82 644 IPR018164 GO:0000166|GO:0004813|GO:0005524|GO:0006419
Lja1g2406 974 SMART tRNA_SAD_4 743 786 IPR012947 GO:0004812|GO:0005524|GO:0043039
Lja1g2406 974 Coils Coil 822 842 - -
Lja1g2406 974 Pfam DHHA1 domain 823 965 IPR003156 GO:0003676
Lja1g2406 974 TIGRFAM alaS: alanine--tRNA ligase 82 950 IPR002318 GO:0000166|GO:0005737
Lja1g2406 974 Hamap Alanine--tRNA ligase [alaS]. 78 971 IPR023033 GO:0004813
Lja1g2406 974 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 743 786 IPR012947 GO:0004812|GO:0005524|GO:0043039
Lja1g2406 974 PANTHER ALANYL-TRNA SYNTHETASE 78 966 - -
Lja1g2406 974 PANTHER ALANINE--TRNA LIGASE, MITOCHONDRIAL 78 966 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2406 Lja-Chr1 27786674 27792179 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2406 K01872 - gmx:100817906 1549.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2406 1 27786674 27792179 Lja1g2406 1 27786674 27792179 ECH