Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2404 ATGTCGTGTTTATTGCCACACTTCAAGTGCCATCCTCATCCCTCTCCTCCTACGCATCATCATAACCATCACCATCTATTCATAACGAAAACAAGACCAAATTTGTGTTTCCAGCCTCAATGTGTTTTGTTAGCCACAACTTCAGTATCAAAATCATCAGCGGCACTCCTTAATCTGCCAACCGAGTTGGAATTAGATGCTCCAAACACGCCTTGGCCCTATCCCTCCACGCAGGCAAACTTTAAAGCAACGTCGTCTGCAGAATCACTGATCAGCAGTGAAGATGCTGTAATAGCTGCTGCTGCTTCTGAAGCTCTTGCTCTTGCTAAAGCGGCTGCGAAGGTTGCAAAGGATGCGGCTCTACTAGTAAAAAAGAGGCCCCCAGCCGAAGCAGGGTATAGACCACAAGTTCCTTCCAAATCTGATAATTTACTTCTCAATTGGATTCAACATATGGAAGCAGAAGATGTTGTAGCAGGAGGATCCATGGGTGCTGGAGCAGAAGTAATGGAAGCTGTTGACATAAGCCCCAGTGAAGAGGAGTTTGATGATGCGGAGCCTACCCTTGAGGAACTTGAGCGTGAGCAGGAAGAGCTTTCCAATAGTATAACTGCAAGATCTAGCCGCCAAACAGAAAGAAAAGCTAAAAGAGTCAGAGCGACTGAGAAAGCTACAACAAATATTGTGTCTTTCAAGTCTGGCTCCACCAGCAGGAAAAAGCGTGTTCCCGTGCAAGAAGTAGACTATTCTGATCCACTTCGTTACTTAAGAACAACAACTAGAGCTACTAGGCTTCTGACCCCAACTGAAGAAATTGAGTTGTCTGAAGGAATACAGGACCTAATAAAGCTTGAAAAACTCCAGGAGGATCTTGCAGAAAAGTGTGGTGATCAGCCCACATTTGCCCAATGGGCTGCAGTTGCAGGGGTAGATCAAAAGACCCTGAGAAAACGTTTAAATTATGGCATATTTTGTAAAGAAAAGATGATTAAAAGCAATATACGACTCGTCATATCAATTGCTAAGAATTATCAGGGAGCTGGGATGAATCTGCAAGATCTTGTCCAGGAAGGATGCCGAGGTCTTGTAAGAGGTGCAGAGAAGTTTGATGCTTCCAAGGGTTTTAAGTTTTCGACCTATGCTCATTGGTGGATTAAACAGGCAGTTCGGAAATCACTCTCTGATCAGTCAAGAACTATTCGCCTGCCATTTCACATGGTGGAGGCGACTTACAGAGTGAAGGAGGCAAGAAAACAATTGTATAGTGAAAATGGAAGACACCCTGATGATGAAGAAGTTGCCGAAGCAACTGGGCTGTCAATGAAGAGGCTTAGTGCTGTACTTTTGACCCCAAAAGCTCCCAGATCTCTGGAACAGAAGATTGGGATCAACCAGAATCTTAAACCTTCGGAAGTAATTGCTGATCCTGAGGCTGAAACAGCTGAAGAACAGCTCATTAAGCAATTCATGAAGAAGGACTTGGAAAAGGTACTGGACAGTCTAAATCCAAGAGAGAAGCAGGTCATTAGATGGAGATTTGGTATGGATGATGGAAGGATGAAGACCCTGCAAGAGATAGGAGAAATGTTAGGTGTGAGTAGGGAGAGAATTAGGCAAATTGAGTCTTGTGCTTTTAGGAAACTAAAGAACAAGAAGAGAAACAAGCATTTGCAGCAGTATTTGGTTTCACAATCCTAG 1698 0.4382 MSCLLPHFKCHPHPSPPTHHHNHHHLFITKTRPNLCFQPQCVLLATTSVSKSSAALLNLPTELELDAPNTPWPYPSTQANFKATSSAESLISSEDAVIAAAASEALALAKAAAKVAKDAALLVKKRPPAEAGYRPQVPSKSDNLLLNWIQHMEAEDVVAGGSMGAGAEVMEAVDISPSEEEFDDAEPTLEELEREQEELSNSITARSSRQTERKAKRVRATEKATTNIVSFKSGSTSRKKRVPVQEVDYSDPLRYLRTTTRATRLLTPTEEIELSEGIQDLIKLEKLQEDLAEKCGDQPTFAQWAAVAGVDQKTLRKRLNYGIFCKEKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKNKKRNKHLQQYLVSQS* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2404 565 PIRSF Sigma_factor_SigC 1 565 IPR016262 -
Lja1g2404 565 Pfam Sigma-70 region 2 329 398 IPR007627 GO:0003700|GO:0006352|GO:0006355
Lja1g2404 565 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 250 399 IPR013325 GO:0003700|GO:0006352|GO:0006355
Lja1g2404 565 Coils Coil 182 209 - -
Lja1g2404 565 ProSitePatterns Sigma-70 factors family signature 2. 522 548 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lja1g2404 565 PANTHER RNA POLYMERASE SIGMA FACTOR SIGB 28 562 - -
Lja1g2404 565 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 461 560 IPR013324 -
Lja1g2404 565 Gene3D RNA Polymerase Primary Sigma Factor 148 401 - -
Lja1g2404 565 PRINTS Major sigma-70 factor signature 501 513 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lja1g2404 565 PRINTS Major sigma-70 factor signature 353 366 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lja1g2404 565 PRINTS Major sigma-70 factor signature 522 537 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lja1g2404 565 PRINTS Major sigma-70 factor signature 537 548 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lja1g2404 565 PRINTS Major sigma-70 factor signature 377 385 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lja1g2404 565 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 402 475 IPR013324 -
Lja1g2404 565 Pfam Sigma-70 region 3 408 484 IPR007624 GO:0003700|GO:0006352|GO:0006355
Lja1g2404 565 Gene3D - 402 479 IPR036388 -
Lja1g2404 565 Gene3D - 483 565 IPR036388 -
Lja1g2404 565 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 28 562 - -
Lja1g2404 565 CDD Sigma70_r4 491 542 - -
Lja1g2404 565 MobiDBLite consensus disorder prediction 196 220 - -
Lja1g2404 565 Pfam Sigma-70, region 4 497 549 IPR007630 GO:0003700|GO:0006352|GO:0006355
Lja1g2404 565 Pfam Sigma-70 factor, region 1.2 251 280 IPR009042 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987
Lja1g2404 565 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 327 551 IPR014284 GO:0003700|GO:0006352|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2404 Lja-Chr1 27770942 27775232 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2404 - - aprc:113864822 816.609