Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2402 ATGGAAGGTGAGGGTGAGAGGAAAAGAAGAAGTTTATGCTGCGTATGCAATGAAAGAAGACCTTCCCTGAAGAGGCCCAAAACACTCGAACACATTTGCAGGGAATGCTTCTACACCGTCTTCGAGGATGAGATCCACCAAGTCATCGTCACCAACAACCTCTTCCGCCGCGGCGAACGCGTCGCCATCGGTGCTTCCGGCGGCAAAGACTCCACCGTACTCGCTTACGTCTTATCCAAACTCAACCGCGTCCACGATTACGGCCTCCACCTCTTCCTCTTGTCCGTCGACGAAGGCATCACCGGCTACCGCGACGACTCGCTCCAAACCGTTCACAGAAACCAGATTCAGTACGGTTTGCCCCTCCAAGTCGTCTCCTACATGGACCTCTACGGTTGGACCATGGATGACATCGTCAAGCTTATTGGTCTCAAGAACAACTGCACGTTCTGCGGTGTCTTCCGCCGTCAGGCACTTGATCGCGGTGCTGCTCTTTTGAAAGCTGATAAACTCGTTACTGGTCATAATGCTGATGATATTGCAGAGACTGTTCTGCTTAATATCTTAAGAGGTGATATTGCTAGATTGAGTAGATGCACTTCAATCACCACTGGTGAAGATGGTCCAATCCCTAGATGCAAGCCTTTCAAGTACACATATGAGAAGGAGATTGTAATGTATGCGTATTTCAAGAGGCTGGACTACTTTTCGACAGAATGTATTTATTCTCCAAATGCATATCGTGGTTTTGCTCGAGAGTTTATCAAGGATTTGGAAAGAATGAGACCTAGAGCCATTCTAGACATCATCAAATCAGGGGAGAATTTCAGGATCTCTACTACCACCAAAATGCCGGAGCAGGGAACATGTGAACGCTGTGGTTATATTTCTAGTCAGAAATGGTGCAAAGCTTGTGTTCTACTTGATGGATTGAATCGAGGTTTGCCTAAGCTGGGAATTGGACGGAGTCGGGGTGGTATTGGTGGTAAGGATGGAAATGAAGGTGGAAAGAGCATCGAGAGCAAACAATGTGGAACTCTGGATTTCTAA 1050 0.4743 MEGEGERKRRSLCCVCNERRPSLKRPKTLEHICRECFYTVFEDEIHQVIVTNNLFRRGERVAIGASGGKDSTVLAYVLSKLNRVHDYGLHLFLLSVDEGITGYRDDSLQTVHRNQIQYGLPLQVVSYMDLYGWTMDDIVKLIGLKNNCTFCGVFRRQALDRGAALLKADKLVTGHNADDIAETVLLNILRGDIARLSRCTSITTGEDGPIPRCKPFKYTYEKEIVMYAYFKRLDYFSTECIYSPNAYRGFAREFIKDLERMRPRAILDIIKSGENFRISTTTKMPEQGTCERCGYISSQKWCKACVLLDGLNRGLPKLGIGRSRGGIGGKDGNEGGKSIESKQCGTLDF* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2402 349 Pfam PP-loop family 61 248 IPR011063 -
Lja1g2402 349 TIGRFAM TIGR00269: TIGR00269 family protein 210 309 IPR000541 GO:0000049|GO:0002098|GO:0034227
Lja1g2402 349 PANTHER ATPASES OF THE PP SUPERFAMILY-RELATED 12 338 - -
Lja1g2402 349 Pfam Zinc-ribbon 288 318 IPR032442 -
Lja1g2402 349 PANTHER CYTOPLASMIC TRNA 2-THIOLATION PROTEIN 1 12 338 IPR000541 GO:0000049|GO:0002098|GO:0034227
Lja1g2402 349 Hamap Cytoplasmic tRNA 2-thiolation protein 1 [CTU1]. 11 323 IPR000541 GO:0000049|GO:0002098|GO:0034227
Lja1g2402 349 MobiDBLite consensus disorder prediction 329 349 - -
Lja1g2402 349 CDD Alpha_ANH_like_II 60 246 - -
Lja1g2402 349 PIRSF ATPase_YdaO 8 320 IPR035107 GO:0008033
Lja1g2402 349 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 46 277 - -
Lja1g2402 349 Gene3D HUPs 12 326 IPR014729 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2402 K14168 - gmx:100816096 615.535