Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2400 ATGACGCTCCATGAGATTCTGATACAGAAGCTTCTCCGCACCAATGCCCAGATTGGTCGCCGAGCAGCAACCCATCATTTCAAGGTCTACACCTATGGCTTCCGCAACAACATGGCCATAATCGATTCCGACAAAACCCTAATTTGCATGCGCAGTGCTTGCAACTTCATGGCTTCCCTTGCACGCCACAACGGTCGCTTCATGTTCATCAACACCAACCCTCTCTTCGACGAAATCTTCGAGCTCATGACCAAGAAGCTCGGCTACTATTCCCCTTCTTCCACCTCTCTCTGGCGCACCGGCGGCTTCTTGACCAACAGTTACAGCCCCAAGAAGTTCCGCTCTCGCAACAAGAAGCTCTGCTTTGGTCCCACCCAGCCACCTGATTGCATTGTCATCGTTGATACTGAGAGCAAATCCTCCGTCTTCAACGAGGCTTTCAAGCTTCAAATCCCCGTTGTCGCTCTCGTCGACTCGACCATGCCTCTTGAAACGTTTAACCGTATTGCTTATCCTGTTCCCGCCAATGACTCTGTCAAGTTTGTTTATCTATTCTGTAATTTGATCACCAAGACGTTGCTACTCGAGCAGCAGAAGTTGAAGCTCGATGACCGAGAAGAAGCTGCTCCTAGAATTGAAGAAAGCAAGGGCAAGAGTGATTTGGCTAAGGTTGATTTAACTGTTATTCCTTATGCAAATTTAGCACCCTTACATGAAGAAGATATGGAAGAAGCTAAAAAGCTTTTGGACAAGCTTGTTGTTTTGAAGTTCAACGGCGCCCCGGATAGCAATATGGGTTTCGAAGACCCCAAATCTACAATTGATATTTGTGATGGGCTGACATTGTTGGACTTGATCATTAACCAGATTGAGACCCTCAACTCCAAGTATGGATGCAGGCTTCCGTTGCTTATCTCTGACAAAGATGATACTCATGATAATACTGCAAAGGTTTTGGAAAAGTATTCGAAATCAAGTGTTGATTTGCGCACTTTAAAGCAGGGTGAAAGTCCAGAGTTGAAATTGCCGGGTGGGCTTCACAGCAAGGAGGAAGTGAATCCATTTGACAATGCTGATATTTTCCATTCTCTAATGATTGATGGAACCCTTGATTTACTATTATCACAGGGCAAGGAGTATATCCTTGTGATGAAGTCAGACAATGTGGCTACAGTCATTGATCCAAACATACTAAACCATTTGATGACAAATGATATCGAATATTGCATGGAGGTGACACCAAGCCATTCGTTTAATTTAATCTTAACTCCAATGAATTTTAAGCTTCAGGAGATTGCTCAAAACCAAGATAAACAGTTGAGGGATAATTGCAAACTCATTGATACCAGGAACACCTGGGTGAGTTTAAGAGCCATTAAGAGGCTTGTTGAGACTAATAGACTAAAGCACAAGATGCCTTCAGAAACTAAGGAAAATGACTATGATCAAACTCTTCTACCAGATTCAGAAGCTGGACCGGAAAAACAGCTCTTCAATAATATGATTGGTGTCTCTGTACCCGAATCTCGTTTTCATCCCTTGGATGCAACATCAGATTTACTAATTCTACAGTCAGATCTATACATGTGCAGAGAAGGTGTTTTAACTCGTAATCCAGCTAGAGCTAACCCTTTAAATCCTGTGATAGACTTGGGACCAGAATTTGAAAAGATTCTGGACTTCCAAAGTCGCTTCAGATCCATTCCAAGCATCATTGGTTTGGACAGTTTGATGGTGAGAGGTGATGTGTGGTTTGGAACTAATATTACATTAAAGGGGCAAGTGACTATTGCTGCCAAACCTGGCTTGAAATTGGAAATCCCCGATGGGGCAGTAATTGACAATAAGGAGATCAACGACCCTACAGATATCTGA 1875 0.4325 MTLHEILIQKLLRTNAQIGRRAATHHFKVYTYGFRNNMAIIDSDKTLICMRSACNFMASLARHNGRFMFINTNPLFDEIFELMTKKLGYYSPSSTSLWRTGGFLTNSYSPKKFRSRNKKLCFGPTQPPDCIVIVDTESKSSVFNEAFKLQIPVVALVDSTMPLETFNRIAYPVPANDSVKFVYLFCNLITKTLLLEQQKLKLDDREEAAPRIEESKGKSDLAKVDLTVIPYANLAPLHEEDMEEAKKLLDKLVVLKFNGAPDSNMGFEDPKSTIDICDGLTLLDLIINQIETLNSKYGCRLPLLISDKDDTHDNTAKVLEKYSKSSVDLRTLKQGESPELKLPGGLHSKEEVNPFDNADIFHSLMIDGTLDLLLSQGKEYILVMKSDNVATVIDPNILNHLMTNDIEYCMEVTPSHSFNLILTPMNFKLQEIAQNQDKQLRDNCKLIDTRNTWVSLRAIKRLVETNRLKHKMPSETKENDYDQTLLPDSEAGPEKQLFNNMIGVSVPESRFHPLDATSDLLILQSDLYMCREGVLTRNPARANPLNPVIDLGPEFEKILDFQSRFRSIPSIIGLDSLMVRGDVWFGTNITLKGQVTIAAKPGLKLEIPDGAVIDNKEINDPTDI* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2400 624 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 196 514 IPR029044 -
Lja1g2400 624 Gene3D Hexapeptide repeat proteins 515 624 - -
Lja1g2400 624 Gene3D - 2 195 - -
Lja1g2400 624 Pfam Ribosomal protein S2 11 108 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lja1g2400 624 Pfam Ribosomal protein S2 125 192 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lja1g2400 624 PANTHER UTP-GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE 1 624 - -
Lja1g2400 624 PRINTS Ribosomal protein S2 signature 8 26 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lja1g2400 624 PRINTS Ribosomal protein S2 signature 128 145 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lja1g2400 624 PRINTS Ribosomal protein S2 signature 169 183 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lja1g2400 624 PRINTS Ribosomal protein S2 signature 37 46 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lja1g2400 624 PRINTS Ribosomal protein S2 signature 145 156 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lja1g2400 624 PANTHER - 1 624 IPR016267 GO:0003983|GO:0006011
Lja1g2400 624 SUPERFAMILY Ribosomal protein S2 8 201 IPR023591 -
Lja1g2400 624 SUPERFAMILY Nucleotide-diphospho-sugar transferases 224 599 IPR029044 -
Lja1g2400 624 Pfam UTP--glucose-1-phosphate uridylyltransferase 228 592 IPR002618 GO:0070569
Lja1g2400 624 CDD RPS2 11 192 IPR001865 GO:0003735|GO:0005840|GO:0006412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2400 K00963 - gmx:100812583 894.034