Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2393 ATGGCTGTTTCCGCCACCAAATTCACACTCACCGGAACCCTACCTCGCCTCCCTTCTCATCCACGACGACCAACTCGAACTCCTTCCATCACAATGGCCGTTTCCGTTGACCCCAAGACCAGCACCAAACTCATTCTTCGCAAGTCTGAAGAAGCTTTCGCTGCTGCCAAGGAATTGATGCCCGGAGGTGTCAACTCACCTGTTCGTGCCTTCAAATCTGTGGGTGGACAGCCAATTCTTATTGACTCAGTCAAAGGATGTCGCATGTGGGACATTGATGGCAATGAGTACATTGACTACGTTGGTTCTTGGGGGCCTGCAATTATTGGTCACGCTGATGATCAGGTGCTTGCAGCTCTCGGTGAAACAATGAAGAAAGGAACCAGCTTTGGTGCACCTTGTCTGCTGGAAAACACATTAGCAGAGATGGTTATCTCTGCAGTTCCGAGCATTGAAATGGTACGATTTGTTAATTCTGGCACTGAAGCTTGCATGGGTGCGCTCCGACTTGCTCGTGCTTTCACTGGAAATGAGAAGATCATCAAGTTTGAGGGCTGTTATCATGGCCATGCTGATCCTTTTCTAGTCAAGGCAGGTAGTGGGGTTGCTACCTTAGGACTTCCCGATTCCCCTGGCGTTCCTAAAGCTGCCACTTTTGAGACCCTCACAGCCCCCTACAATGACTTCTCAGCTGTTGAGGAGATCTTTAAGGCAAACAAAGGAGAGATAGCAGCACTTTTCCTCGAACCTGTTGTTGGAAACTCTGGTTTCATTCCTCCTAAACCTGAATTTCTCAGTTTCTTACGCAAAATCACCAAAGAGAACAACACCCTGCTAGTCTTTGATGAAGTTATGACTGGATTTCGTTTGTCATATGGAGGTGCTCAAGAATATTTTGGCATAACTCCTGATTTAACAACTCTAGGAAAGATCATCGGTGGGGGTCTGCCAGTAGGCGCTTACGGAGGGAGGAGGGAAATTATGCAGATGGTGGCACCAGCAGGACCAATGTACCAGGCTGGGACCTTGAGTGGTAACCCTTTGGCCATGACTGCTGGCATACAAACTCTGAAGCGTATTAAGGAGCCAGGGACTTACCAATACTTGGACAAAATTACAGGTGAGCTTGTTCAAGGCATCGTTGAAGCTGGTAAGAAGGCAGGCCATGCAATATGTGGTGGGCATATAGGTGGTATGTTTGGGTTTTTCTTCACAGAAGGACCTGTGCACAATTTCACAGATGCCAAAAAAAGTGATGCGGACAAGTTTGTTAGGTTCTTCTGGGGAATGTTAGAGGAAGGTGTGTATTTGGCACCTTCACAATTTGAGGCTGGCTTCACCAGCTTGGCACATACTTCTGATGACATCAAAAAGACCATAGCTGCTGCCGAGAAGGTTTTCAGGCAGATTTGA 1413 0.4756 MAVSATKFTLTGTLPRLPSHPRRPTRTPSITMAVSVDPKTSTKLILRKSEEAFAAAKELMPGGVNSPVRAFKSVGGQPILIDSVKGCRMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENTLAEMVISAVPSIEMVRFVNSGTEACMGALRLARAFTGNEKIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKAATFETLTAPYNDFSAVEEIFKANKGEIAALFLEPVVGNSGFIPPKPEFLSFLRKITKENNTLLVFDEVMTGFRLSYGGAQEYFGITPDLTTLGKIIGGGLPVGAYGGRREIMQMVAPAGPMYQAGTLSGNPLAMTAGIQTLKRIKEPGTYQYLDKITGELVQGIVEAGKKAGHAICGGHIGGMFGFFFTEGPVHNFTDAKKSDADKFVRFFWGMLEEGVYLAPSQFEAGFTSLAHTSDDIKKTIAAAEKVFRQI* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2393 470 Hamap Glutamate-1-semialdehyde 2,1-aminomutase [hemL]. 48 470 IPR004639 GO:0033014|GO:0042286
Lja1g2393 470 CDD OAT_like 53 467 IPR005814 GO:0008483|GO:0030170
Lja1g2393 470 Gene3D Aspartate Aminotransferase, domain 1 51 463 IPR015422 GO:0003824
Lja1g2393 470 Gene3D - 114 362 IPR015421 GO:0003824
Lja1g2393 470 Pfam Aminotransferase class-III 78 438 IPR005814 GO:0008483|GO:0030170
Lja1g2393 470 MobiDBLite consensus disorder prediction 1 28 - -
Lja1g2393 470 ProSitePatterns Aminotransferases class-III pyridoxal-phosphate attachment site. 279 315 IPR005814 GO:0008483|GO:0030170
Lja1g2393 470 PANTHER BNAA09G06670D PROTEIN 24 469 - -
Lja1g2393 470 SUPERFAMILY PLP-dependent transferases 48 469 IPR015424 -
Lja1g2393 470 TIGRFAM hemL: glutamate-1-semialdehyde-2,1-aminomutase 48 469 IPR004639 GO:0033014|GO:0042286
Lja1g2393 470 PANTHER GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE 24 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2393 Lja-Chr1 27638361 27640825 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2393 K01845 - gmx:100790574 808.135