Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2386 ATGGCAATTGAAACTCAGTTGTATCCCAGCAATACAGGATTTCCATTTTGTGGATCACAACAGCAATTGGATCCTGCTCTTGTTTTTCTTTCTACTCCCAATGCCACCGATAGATATAACAACAATCAACCTTTATCAAATTCTTCTCAAAGAATGACTATTGATTTTGATGGACAGAGGGACCAGATTGATCAGTATATCAGATCACAGAATGAGAAATTGAGAATTTTGTTGCAAGAACAGAGAAATCAACAAGTGTTCACGTTGCTGAAAACGATGGAGTCAGATGTGTCTTATGTACTGAGCCAGAAGGATGAACAAATAGCTCAAGCAGCTAAGAAAAAGACTGAATTAGAAGAGTTTTTGATAAGATTAGAGGCAGAGAATCAATTATGGCGGAGAGTGGCTCAGGAAAACGAAGCAGTAGTCTTGTCACTGCACAACACCTTAGAACAAGTAAAAGAAAGAAATCGGGGGCTGGTAGCAGAAGATGCAGAGTCCTACTGTTGTGATGAGAACAGAGGAAACAGGGTGATGCAAGAAGGAACAGGGGAAACAGAGGAAATAGGAAAAGAGACTACTGAACAGATTACTATGGTTTGCAAATGCTGTCATTCTCGAAGCTCGTGCTTTATGTTCCTTCCTTGCAGGCATCTTTGTTCATGCAAAGCTTGTGAGCCTTTTCTCCAAGCCTGTCCTGTGTGCAAAATGCCCAAGAAAACTAGCATAGAAACTTTGATTTTCTAG 747 0.4029 MAIETQLYPSNTGFPFCGSQQQLDPALVFLSTPNATDRYNNNQPLSNSSQRMTIDFDGQRDQIDQYIRSQNEKLRILLQEQRNQQVFTLLKTMESDVSYVLSQKDEQIAQAAKKKTELEEFLIRLEAENQLWRRVAQENEAVVLSLHNTLEQVKERNRGLVAEDAESYCCDENRGNRVMQEGTGETEEIGKETTEQITMVCKCCHSRSSCFMFLPCRHLCSCKACEPFLQACPVCKMPKKTSIETLIF* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2386 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 246 IPR013083 -
Lja1g2386 248 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 27 247 IPR017066 -
Lja1g2386 248 Coils Coil 108 128 - -
Lja1g2386 248 PIRSF SBP1_RNase_bind 27 248 IPR017066 -
Lja1g2386 248 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 2-RELATED 27 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2386 Lja-Chr1 27571086 27572876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2386 198 236 Miscellaneous Gene Families AT4G39050 38.462 2.58e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2386 K19042 - gmx:100776899 257.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2386 1 27571086 27572876 Lja1g2386 1 27571086 27572876 ECH