Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2385 ATGGGTGCTCTTGATCACATCTCTGATCTCTTTGACTGCTCCAGCGGAAGTTCACACAAAAAACGCAAACAATTGCAGACGGTGGAGGTGAAAGTGAAGATGGACTGCGACGGATGCGAGAGGAAGGTGAGGAAGGCGGTGGAGGGTATGAAAGGAGTGAACTCGGTGGATATTGAGCGCAAGGCCAGCAAGGTCACCGTTACTGGGTATGTGGAACCCAACAAGGTTGTGTCCCGCATCGCTCACCACACTGGGAAAAAGGCAGAGATCTGGCCCTATGTTCCATACGACGTCGTTGCTCACCCCTATGCCCCTGGTGTGTATGATAAGAGAGCACCTTCTGGTTATGTCAGAGACGCTGAGCAAACTCAGTATTCCCAGCTCACACGTGCCAGCTCCACGGAGGTCCGGTACACCACCGCTTTCAGCGACGAAAACCCCACCGCCTGTGTCGTCATGTGA 462 0.5368 MGALDHISDLFDCSSGSSHKKRKQLQTVEVKVKMDCDGCERKVRKAVEGMKGVNSVDIERKASKVTVTGYVEPNKVVSRIAHHTGKKAEIWPYVPYDVVAHPYAPGVYDKRAPSGYVRDAEQTQYSQLTRASSTEVRYTTAFSDENPTACVVM* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2385 153 CDD HMA 29 89 IPR006121 GO:0046872
Lja1g2385 153 SUPERFAMILY HMA, heavy metal-associated domain 25 92 IPR036163 GO:0046872
Lja1g2385 153 Gene3D - 22 90 - -
Lja1g2385 153 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26 2 153 - -
Lja1g2385 153 ProSiteProfiles Heavy-metal-associated domain profile. 34 80 IPR006121 GO:0046872
Lja1g2385 153 Pfam Heavy-metal-associated domain 30 86 IPR006121 GO:0046872
Lja1g2385 153 PANTHER COPPER TRANSPORT PROTEIN ATOX1-RELATED 2 153 IPR045181 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2385 Lja-Chr1 27555110 27556070 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2385 - - gmx:100780624 273.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2385 1 27555110 27556070 Lja1g2385 1 27555110 27556070 ECH