LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja1g2376	ATGGAAACTCGTAGCCGGAAGCGGGCGGAGGCTTCCTCACCTGCCCCTTCAACCACCAAGCAACCTCGTCTTTCTTCTTCTTCCACCACTGCTGCTGTTAAAACTCGCTCTCGTTCTCGCTCATCCAAGACTTCTCCTCCCATGGACCCCACCAACGAATCCTCTGCCTCACGCCGTGATCCTCGCCGTGCCAGAAATCCTGACCGGGACAATTCCGATAAAGGAAAAGAGAAAGAACATGATGCTCTCAGCCTTAGAGATAGGGATGCAGACCGAGACCGAGCCTTGGGGTTAAACATGGACCACGACGACGATGATGATAACGACAGTGAGGCTGGAGTTGGAATTCTGCATCACAATTTGACTTCTGCAAGCAGTGCTCTTCAAGGCCTTCTTCGTAAGCTCGGTGCCGGTTTGGATGATCTGCTTCCGGGTGGTTCTGCATCCTCATCTCACCTGACCGGCAGGCTCAAGAAAATGTTGTCTGGTTTGCGAGCAGATGGGGAAGAAGGTCGCCAGGTTGAGGCGCTCACGCAGCTCTGTGACATGCTTTCCATTGCCACTGAAGAATCCCTCAGTACCTTCTCCGTTGATTCCTTCGCTCCCGTGCTTGTAGGACTGCTTAATCACGAGAGCAACCCTGATATCATGCTTCTCGCTGCCAGGGCGCTGACTCATCTCTGCGATGTGCTCCCTTTGTCGTGTGCTGCCGTTGTGCACTATGGTGCGGTGCCAATCTTCTGCGCCAGATTGCTTACCATAGAGTACATGGACTTAGCTGAGCAGTCTCTTCAAGCCCTGAAAAAGATTTCTCAGGAGCACCCGACGGCCTGTCTTCGAGCAGGTGCTCTGATGGCGGTGCTTTCTTATTTGGACTTCTTCTCAACAGGAGTTCAGCGGGTGGCATTGTCTACGGCAGCAAATATGTGCAAAAAGCTCCCTTCTGATGCAGCTGACTTTGTGATGGAAGCTGTTCCTCTTTTGACAAACCTCCTTCAGTACCATGATGCCAAGGTCCTTGAGCATGCCTCTGTTTGTTTGACTCGAATAGCTGAAGCTTTTGCATCATCTCCAGACAAATTAGATGACTTGTGCAATCATGGACTGGTAACACAAGCTGCCTCCCTCATTTCTACCAGCAATTCTGGAGGTGGACAGTCTTCTCTCAGCACACCAACATATACCGGTTTAATCCGACTTCTTTCCACATGCGCAAGTGGGTCCCCTCTTGGAGCTAAAACACTGCTTCTCCTTGGAATTAGTGGCATTCTTAAAGATATACTATCTGGTTCTGGAGTATCTTCTAATGCCTCTGTTTCACCTGCATTGAGTAGGCCAGCAGAGCAGATATTTGAGATTGTGAACCTGGCAAATGAGCTTCTGCCTCCACTGCCTCAAGGAACCATTTCACTTCCAGTCAGCTCCAACTTGTTTGTGAAAGTATCGGTTGTCAAAAAGTCTCCTGCTACCAGTTCTGGGATGCAGGAAGACACAAATGGAAATGTTCACGAGATATCAGCTCGTGAGAAGTTATTAAATGATCAGCCTGAGCTACTTCAGCAATTTGGGATGGATCTCCTCCCAGTTTTAATGCAGATACATGGTTCCAGCGTCAATGGTCCTGTTCGCCACAAATGTCTCTCTGTCATAGGAAAACTGATGTATTTCAGCACAGCTGAGATGATCCAGTCTTTGTTGAGTGTGACTAATATATCAAGTTTCTTAGCTGGTGTGTTGGCATGGAAAGATCCTCATGTTTTGGTTCCTGCCTTACAAATTGCTGAAATTCTAATGGAAAAGCTTCCTGGAACTTTCTCTAAGATTTTTGTTCGAGAAGGTGTGGTCCATGCTGTTGACCAACTTATTTTGGCTGGAAAGTCAACCAATATCACTACACAGGCATCATCTGCAGAGAAGGATAATGGTTCTGTATCCGGAACATCATCTCGCTCCAGGCGCTATCGCCTTCGCAGTGGTAACTCAAATCCTGATACAAATCCCTTGGATGATTTGAAGAGTCCAGCTACAGTAAATGTTGGTATGCCACCAAGTTCTGTGGATACTCCAACAATTAATTCAAGTACTCGTGCATCTGTTAGCTCAACTGCTAAAGCTTTTAAAGAGAAGTACTTTCGTTCTGATTCTGGGACTGCTGAAGTGGGTGTTAGTGATGATCTTTTGCACTTGAAAAATCTTTGCATGAGGTTGAACACTGGTCTTGATGACCAAAGAACTAAGGCAAAGGGAAAAGTTAAAGCTTCTGGTTTTGGTCTGGATGATAATTCTGCTAATACGGAAGAGTATTTGATGGAGTTGATATCTGAAATGCTTAGGGAACTTGGTAAAGGAGATGGTGTATCTACTTTTGAATTTATTGGTAGCGGTGTTGTGGCAGCTTTGCTGAATTATTTTTCTTGTGGTTACTTCTCTAAAGATCAAATCTCAGAAACTAATCTGCCAAAGCTTCGCCAACTAGCACTTATGAGGTTTAAGTCATTTGTTGCCGTTGCACTACCTTCCGACACAGACAATGGCGGTGTTGCTCCTATGACTATCTTGGTCCAGAAACTACAAAATGCTTTGTCCTCCTTGGAACGTTTTCCTGTTGTGCTTAGTCATTCAGCTCGGTCATCTAATGGTAGTGCACGACTCTCCTCTGGATTAAGTGCATTATCTCAGCCTTTCAAGTTGCGCCTCTGCAGAGCGCAGGGTGAAAAGTCTCTTAAGGATTATTCATCCAATGTTGTACTGATTGATCCATTAGCAAGTTTAGCAGCCATCGAGGAATTTCTTTGGCCTCGTGTCCAGCGTGGTGATGCTGGTCAAAAGTCTACTGTAGCTGCTGAGAATTCTGAATCTGAAACAACTCCTGCAGGAGCAGGTGCTTCATCTCCTTCCACTTGTACACCCTCCACTGCTCGTCGTCATTCTACTAGATCCAGATCATCTGTTAACATAGGAGATGCACCTAGAAAAGAAATATCTCAAGATAAAAGCATGAGCTCATCTAAAGGCAAGGGCAAAGCTGTATTAAAGCCTGCACAGGAGGAAACAAGAGGGCCCCAAACAAGGAATGCTGCACGCCGCATAGCAGCTCATGACCAAGATAATCAAATGAAACCTGCAAATGGTGACTCAACTTCTGAGGATGAAGAGTTTGATATACCTCCTGTTGAGATTGACGAGGCTTTGGTGATCGAAGATGATGATATTTCTGATGATGATGATGACGACCATGAAGATGTGCTGAGGGATGATTCTCTTCCTGTTTGCTCCACTGACAGGGTGCATGATGTTAAATTGGGTGACTCAGTTGAGGAGAGTACTGTTGCTTCGGCAACAAGAAGTAGCCAGACTAATGCAGCCTCAGGTTCTAGCAGCAAAGCTTGTACAGCTAGGGGATCTGACTCTGCTGATTTTAGGAGTGGCTATTCATCTAACTCAAGGGGTGCAATGTCATTTGCTGCTGCTGCTATGGCTGGACTTGGATATGCTAATGGCAGAGGTTTCAGGGGTGGCAGAGATCGGCACGGGCGTCTGGTATTTGGCAGTTCCAATGACCCTCCAAAGTTGTTTTTTAGTGCCGGTGGGAAGCAGCTTAGTAGAAATTTGACTATATATCAGGCAGTTCAAAGACAGCTTGTATTAGATGAAGATGATGATGAGAGGTTTGCTGGAAGTGACCATATATCCAGTGATGGAAGTGGTCTGTGGGGTGATATTTACACCATCACTTATCAGAGAGCAGAAAACCAGACAGACAGGGCCCTTACTGGAGGATCAAATTCAAACATTTCAAAGTCTGCCAAATCCAGTTCTGAAGCTAAGTTGCATCAGACATCAGTACTAGACAGTATATTGCAGGGAGAATTGCCCTGTGATCTAGACAAATCAAATCCTACCTACAATATTTTGGCACTACTGCGTGTGCTGGAGGGTTTGAACCAACTTGCACCTCGTTTAAGGGCCCAAATGGTTTCTGATAGCTTTGCTCAGGGAAAAATCTTGGATTTAGATGAGCTAGGTGTTACAACTGGTGCTAGGGTGCTTGTAGAGGAATTCACAAGTAGCAAGCTTACTCCAAAATTGGCAAGGCAAATACAAGATGCCCTTGCCCTATGCAGTGGGAGTCTTCCCTTATGGTGTTACCAGTTGACTAAAGCATGCCCTTTCTTGTTTCCTTTTGAGACTCGACGGCAGTATTTTTACTCAACTGCCTTTGGGTTATCTCGTGCCCTCTATCGACTTCAGCAGCAGCAAGGTGCTGATGGTCTGGGATCAACAACTGAAAGAGAGATGAGAGTTGGGAGATTACAGCGTCAAAAGGTTCGTGTCTCACGAAATCGTGTTTTGGATTCTGCTGCAAAAGTTATGGAGATGTACTCTAGCCAGAAAGCTGTACTTGAGGTAGAATATTTTGGTGAAGTTGGCACTGGCCTTGGTCCTACCCTTGAGTTTTATACAATTCTAAGTCATGACTTGCAAAAGCTTGGACTGCAAATGTGGAGATCTTATTCTTCAGATAAACATCACATGGAAGTTGATGGAGATGAGAAGAAAATGAAAATCAATGAAGGGCGTAATTTGGCTGGAGATGGAGAACTTGTTCAAGCTCCTCTGGGGTTGTTTCCTCGGCCTTGGCCTGCAAATGCTGATACATCAGACAGTAGCAAGTTTTCAAAAGTGGTTGAGTATTTTCGCCTGCTAGGCCGTGTTATGGCTAAAGCTCTTCAAGATGGACGGCTATTGGATCTTCCATTGTCAGTTGCATTTTACAAGCTTGTTCTCGGTCAAGATCTTGATTTGCATGACATTCTTTACGTTGATGCTGAGCTTGGGAAGACTTTGCTTGAGTTGAATGCTCTTGTTTACCGGAATCATTATATAGAATCTATTGGTGGTAGCTTTACTGATACAAAGGCCAACTTACTTTTTCGTGGCACCCCAATTGAAGATCTCTATTTGGATTTTACACTTCCTGGTTATCCTGAATATATCCTGAAACCAGGAGATGAATTTGTTGATATCAACAGTTTGGAGGAGTACATATCTTTGGTGGTTGATGCAACTGTCAAAACTGGCATCGTGCGTCAAATAGAAGCATTTAGGGCAGGGTTTAACCAGGTTTTTGACATTTCATCTTTACAAATTTTCACTCCTCAAGAACTGGACAATTTGCTTTGTGGCCGCAGAGAGCAGTGGGAGGCAGAGACACTTGCTGATCATATAAAATTCGACCATGGGTACACGGCAAAGAGCCCTGCCATTGTTAATTTACTAGAAATTATGGGAGAGTTCACACCCGAGCAGCAGCGTGCCTTCTGTCAATTTGTTACTGGTGCACCTAGGCTGCCACCTGGTGGGCTGGCTGTTCTTAATCCAAAATTAACGATTGTGAGGAAGCTTTCGTCTACTGCAGTTAATACTTCATCTAATGGAAATGGACCTTCAGAATCAGCAGATGATGACTTACCCAGTGTGATGACATGTGCTAATTACCTAAAGCTTCCTCCTTACTCTACCAAGGAAATCATGTACAAGAAGCTACTCTATGCAATCAGCGAAGGCCAGGGGTCCTTTGATTTATCATGA	5592	0.451	METRSRKRAEASSPAPSTTKQPRLSSSSTTAAVKTRSRSRSSKTSPPMDPTNESSASRRDPRRARNPDRDNSDKGKEKEHDALSLRDRDADRDRALGLNMDHDDDDDNDSEAGVGILHHNLTSASSALQGLLRKLGAGLDDLLPGGSASSSHLTGRLKKMLSGLRADGEEGRQVEALTQLCDMLSIATEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPLSCAAVVHYGAVPIFCARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDDLCNHGLVTQAASLISTSNSGGGQSSLSTPTYTGLIRLLSTCASGSPLGAKTLLLLGISGILKDILSGSGVSSNASVSPALSRPAEQIFEIVNLANELLPPLPQGTISLPVSSNLFVKVSVVKKSPATSSGMQEDTNGNVHEISAREKLLNDQPELLQQFGMDLLPVLMQIHGSSVNGPVRHKCLSVIGKLMYFSTAEMIQSLLSVTNISSFLAGVLAWKDPHVLVPALQIAEILMEKLPGTFSKIFVREGVVHAVDQLILAGKSTNITTQASSAEKDNGSVSGTSSRSRRYRLRSGNSNPDTNPLDDLKSPATVNVGMPPSSVDTPTINSSTRASVSSTAKAFKEKYFRSDSGTAEVGVSDDLLHLKNLCMRLNTGLDDQRTKAKGKVKASGFGLDDNSANTEEYLMELISEMLRELGKGDGVSTFEFIGSGVVAALLNYFSCGYFSKDQISETNLPKLRQLALMRFKSFVAVALPSDTDNGGVAPMTILVQKLQNALSSLERFPVVLSHSARSSNGSARLSSGLSALSQPFKLRLCRAQGEKSLKDYSSNVVLIDPLASLAAIEEFLWPRVQRGDAGQKSTVAAENSESETTPAGAGASSPSTCTPSTARRHSTRSRSSVNIGDAPRKEISQDKSMSSSKGKGKAVLKPAQEETRGPQTRNAARRIAAHDQDNQMKPANGDSTSEDEEFDIPPVEIDEALVIEDDDISDDDDDDHEDVLRDDSLPVCSTDRVHDVKLGDSVEESTVASATRSSQTNAASGSSSKACTARGSDSADFRSGYSSNSRGAMSFAAAAMAGLGYANGRGFRGGRDRHGRLVFGSSNDPPKLFFSAGGKQLSRNLTIYQAVQRQLVLDEDDDERFAGSDHISSDGSGLWGDIYTITYQRAENQTDRALTGGSNSNISKSAKSSSEAKLHQTSVLDSILQGELPCDLDKSNPTYNILALLRVLEGLNQLAPRLRAQMVSDSFAQGKILDLDELGVTTGARVLVEEFTSSKLTPKLARQIQDALALCSGSLPLWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGADGLGSTTEREMRVGRLQRQKVRVSRNRVLDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTILSHDLQKLGLQMWRSYSSDKHHMEVDGDEKKMKINEGRNLAGDGELVQAPLGLFPRPWPANADTSDSSKFSKVVEYFRLLGRVMAKALQDGRLLDLPLSVAFYKLVLGQDLDLHDILYVDAELGKTLLELNALVYRNHYIESIGGSFTDTKANLLFRGTPIEDLYLDFTLPGYPEYILKPGDEFVDINSLEEYISLVVDATVKTGIVRQIEAFRAGFNQVFDISSLQIFTPQELDNLLCGRREQWEAETLADHIKFDHGYTAKSPAIVNLLEIMGEFTPEQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKLSSTAVNTSSNGNGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLLYAISEGQGSFDLS*	1864

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja1g2376	1863	MobiDBLite	consensus disorder prediction	943	985	-	-
	Lja1g2376	1863	ProSiteProfiles	HECT domain profile.	1563	1863	IPR000569	GO:0004842
	Lja1g2376	1863	CDD	HECTc	1441	1858	IPR000569	GO:0004842
	Lja1g2376	1863	PANTHER	HECT E3 UBIQUITIN LIGASE-RELATED	27	1863	-	-
	Lja1g2376	1863	MobiDBLite	consensus disorder prediction	942	1052	-	-
	Lja1g2376	1863	MobiDBLite	consensus disorder prediction	55	90	-	-
	Lja1g2376	1863	MobiDBLite	consensus disorder prediction	10	54	-	-
	Lja1g2376	1863	Gene3D	Hect, E3 ligase catalytic domain	1733	1861	-	-
	Lja1g2376	1863	Gene3D	-	147	464	IPR011989	-
	Lja1g2376	1863	SUPERFAMILY	ARM repeat	156	630	IPR016024	-
	Lja1g2376	1863	MobiDBLite	consensus disorder prediction	1109	1142	-	-
	Lja1g2376	1863	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE TRIP12	27	1863	IPR045322	GO:0006511\|GO:0061630
	Lja1g2376	1863	MobiDBLite	consensus disorder prediction	632	677	-	-
	Lja1g2376	1863	MobiDBLite	consensus disorder prediction	1	90	-	-
	Lja1g2376	1863	Gene3D	Hect, E3 ligase catalytic domains	1382	1623	-	-
	Lja1g2376	1863	Pfam	HECT-domain (ubiquitin-transferase)	1536	1863	IPR000569	GO:0004842
	Lja1g2376	1863	SMART	hect_3	1452	1863	IPR000569	GO:0004842
	Lja1g2376	1863	SUPERFAMILY	Hect, E3 ligase catalytic domain	1433	1856	IPR035983	GO:0004842

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja1g2376	Lja-Chr1	27441199	27452112	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja1g2376	K10590		-	gmx:100791450	2984.51

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja1g2376	1	27441199	27452112	Lja1g2376	1	27441199	27452112	ECH