Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2375 ATGGGTTTCTTCAGTACTATATTCGGTTTTTTTGGCTTTGGAATTGGGACTTCAATTGGTCTTGTTGTTGGTTATTTTCTCTTCATTCACTTTCAACCCACTGATGTTAAGGATCCCAAAATCCACCCATTGGTGGACGAAGACCCTGCAACTCTGCAACGAATGATTCCTGAGATCCCACTTTGGATAAAAAATCCTGACTTTGATCGAGTTGATTGGCTTAACAAGCTTATTGAATATATGTGGCCTTACCTTGATAAGGCAATATGCAAGACTGCAGAAAACATTGCAAAACCCATAATTGCCGAGCAGGTTCCAAAATATAAAATTGATTCTGTTGAGTTCGAAAAGCTCACATTGGGGTCTCTGCCACCAACTTTTCAAGGAATGAAAGTGTATATGACTGATGAGAAAGAGTTAATTATGGAGCCTTCTATAAGATGGGCCGGAAATCCTAATGTTATTATTGCAGCTAAGGCATTTGGTTTGAAAGCAACCATTCAGGTGGTGGATTTGCAAGTTTTTCTTGCACCTCGTATTACTTTGAAGCCTTTGGTTCCAGCTTTTCCATGCTTTGCCAACATCTATGTTTCTCTCATGGAAAAGCCACATGTTGACTTTGGGCTAAAGCTTATAGGGGCTGAGCTTATGTCTATTCCTGGTCTCTATAGGTTTGTTCAGGAGCTTATCAAAGATCAGGTTGCAAATATGTATCTATGGCCCAAAACACTGGAAGTTCAAGTTTTAGATCCAACAAAAGCCTTGAGGAAGCCTGTTGGAATTTTAAATGCAAAGGTTCTAAAAGCAATGAAGTTAAAGAAGAAAGATCTTCTCGGCGCATCTGACCCTTATGTGAAGCTAAAGCTCTCAGGAGATAACCTGCCATCAAAAAAGACTACTGTGAAGCACAAGAACTTGAACCCTGAGTGGAATGAGGAATTTAGTTTAACTGTTAAAGATCCTGAGTCCCAGACTTTAGAGTTTAACGTTTATGACTGGGAGCAGGTTGGGAAGCATGACAAGATGGGAATGAACGTGATTCCTTTGAAAGAACTTCTTCCTGAAGAGCCTAAAGTTTTTACTCTTGACCTCCTAAAAAACATGGATCCCAATGATGCCCAAAATGACAAGTCTCGTGGGCAGATTGTTATAGAATTAACATATAAACCCTTCAAGGAGGAAGACTTAGCCAAGGGTTTTGATGAGACACAGTTACAAAATGCTCCTGAAGGTACTCCTGCGGGTGGAGGTCTGCTTGTAGTGATAGTCCATGAAGCTCAGGACATTGAAGGAAAGTATCACACCAATCCACATGTACGTCTTATTTTCAAAGGGGAAGAGAGAAAGACAAAGAGCATGAAAAAGAACAGAGATCCAAGGTGGGAAGAGGAGTTCCAATTCATGGCAGAGGAGCCTCCTGCTAATGAAAAATTACATGTGGAGGTTGTCAGCACTTCATCGCGAAACCTGCTACGTCAGAAGGAATCACTCGGTTATGTGGACATCAGTCTTGCGGATGTTGTTGCTAACAAGAGAATCAATGAGAAGCACCATCTTATAGACTCCAAGAATGGTCGCATCCAGATAGAGCTACTTTGGAGAGCTTCATAA 1611 0.4103 MGFFSTIFGFFGFGIGTSIGLVVGYFLFIHFQPTDVKDPKIHPLVDEDPATLQRMIPEIPLWIKNPDFDRVDWLNKLIEYMWPYLDKAICKTAENIAKPIIAEQVPKYKIDSVEFEKLTLGSLPPTFQGMKVYMTDEKELIMEPSIRWAGNPNVIIAAKAFGLKATIQVVDLQVFLAPRITLKPLVPAFPCFANIYVSLMEKPHVDFGLKLIGAELMSIPGLYRFVQELIKDQVANMYLWPKTLEVQVLDPTKALRKPVGILNAKVLKAMKLKKKDLLGASDPYVKLKLSGDNLPSKKTTVKHKNLNPEWNEEFSLTVKDPESQTLEFNVYDWEQVGKHDKMGMNVIPLKELLPEEPKVFTLDLLKNMDPNDAQNDKSRGQIVIELTYKPFKEEDLAKGFDETQLQNAPEGTPAGGGLLVVIVHEAQDIEGKYHTNPHVRLIFKGEERKTKSMKKNRDPRWEEEFQFMAEEPPANEKLHVEVVSTSSRNLLRQKESLGYVDISLADVVANKRINEKHHLIDSKNGRIQIELLWRAS* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2375 536 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 258 393 IPR035892 -
Lja1g2375 536 CDD C2 262 364 - -
Lja1g2375 536 Pfam C2 domain 260 358 IPR000008 -
Lja1g2375 536 Pfam C2 domain 418 517 IPR000008 -
Lja1g2375 536 SMART C2_3c 261 361 IPR000008 -
Lja1g2375 536 SMART C2_3c 418 516 IPR000008 -
Lja1g2375 536 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN-RELATED 1 535 - -
Lja1g2375 536 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 67 247 IPR039010 -
Lja1g2375 536 ProSiteProfiles C2 domain profile. 240 362 IPR000008 -
Lja1g2375 536 ProSiteProfiles C2 domain profile. 401 517 IPR000008 -
Lja1g2375 536 Gene3D C2 domain 418 535 IPR035892 -
Lja1g2375 536 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 535 IPR045050 GO:0008289
Lja1g2375 536 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 249 IPR031468 GO:0008289
Lja1g2375 536 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 417 533 IPR035892 -
Lja1g2375 536 Gene3D C2 domain 256 410 IPR035892 -
Lja1g2375 536 PRINTS C2 domain signature 277 289 IPR000008 -
Lja1g2375 536 PRINTS C2 domain signature 304 317 IPR000008 -
Lja1g2375 536 PRINTS C2 domain signature 326 334 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2375 Lja-Chr1 27432870 27437314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2375 255 517 Lipid Metabolism Gene Families AT3G61300 27.402 3.68e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2375 - - gmx:100780850 934.095
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2375 1 27432870 27437314 Lja1g2375 1 27432870 27437314 ECH