Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2372 ATGGTGCAAGATATTCCATCCTGTTGTCACATATTTTTCTTCCTTCTTCTTCTACTTCGCCCTTCTTCCGTTTCTCCTCTCTATGATGGGCCCCTATATGATTTTACTGCTTACACTGAGTGTAAAGAACATCCTGAGAAGCCACTTTACGGAGGAGGAATCTTCAAAAGAGAGTCTCAGTACTCTCAAAGTGGTGCTGTTGTTGAAGATAGATTTGCCTCCAAAGCTGTCAATGGCTACATGCCTTCACTGCTTCTCAACAATCTCACTCAGGCCACCATCTACTCTTTTTCCATATGGGTGAGGGTTCAAGGTTCAAATTCAGCTATGATAAGGGCCAGCCTGCAAGGGGAAAAAGATGCATTTGTTTGCATTGGGACAGTTTCGGCTAAGAGTGGATGCTGGTCGTTTCTGAAAGGTGGATTTGTTCTGGATTCACCTTCTAATTTATCTACAATCTTCATTCAGAATGCTGGTGGTAATGATGTCAATATAGATATAGCAAGCCCCTCACTCCAGCCATTTACCAAGCAGCAATGGAGAATCAATCAAGAATATATAATTAATCATCAAAGAAAGCGTGCCGTCACTATTCATGTCTCAGATGCTAAAGGAATGAAATTGCAAGGAGCTGCTATCTCTATAGAACAAATCTCAAAAGACTTTCCTATTGGATCTGCCATAGCAAAGACCATTCTTGGAAACTTACCCTATCAGAATTGGTTTGTGAAGCGGTTCAATGCTGCAGTCTTTGAAAATGAGCTCAAATGGTATGCCACTGAGCCTCATCAAGGCCAGGTCAATTACACAATTTCAGACCAGATGCTGCAGTTCTTGAGAGCCAACAAAATCATAGCTAGAGGGCACAATATATTCTGGGAAGACCCTAAATACACTCCAGCATGGGTTCTCAACCTTACTGGTATTCAGTTACGATCTGCGGTGAACTCCCGAATACACAGTCTCATGAACCAATACAAAGAAGAGTTCATACACTGGGATGTCAGCAATGAAATGCTTCATTTTGATTTCTACGAGCAAAAGCTTGGACCTGATGCCACATTGCACTTCTTTGAGACTGCACATAAGTCAGATCCTTTAGCAACCCTATTTATGAATGACTTCAATGTTGTGGAAACATGCAGTGATGTAAATTCCACTGTTGACGCTTTTATCTCAAAGATAAGAGAACTTCAACAAAATGGTGTCTTCATGGATGGAATTGGCTTGGAGGGTCACTTTACAACACCAAATCCTCCCCTTATCAGAGCTATCTTAGACAAGTTGGCAACACTAGATCTTCCTATTTGGCTTACTGAGGTTGATATAAGCAAGACACTTGATCAAGATACACAGGCAATTTATTTGGAACAAGTGTTGAGGGAAGGCTTCTCTCATCCTTCTGTGAATGGGATAATGCTTTGGACTGCACTTCATCCAAATGGGTGCTACCAAATGTGCCTCACAGACAATGATTTCAGAAACCTCCCATCAGGTGATGTGGTAGACAAACTTCTTGAAGAGTGGCATACTGGTCTTGTAGAGGGAGTTGCAGATAAACAAGGTTCCCACAGCTTTTATGGGTTCTTGGGAGAGTATAGAATTAGTGTCAAGTATGGCAACAGGACTACAAGTTCAACATTCTCGCTCAGTGGAGGTGATGAAACTAGACATTTCACTGTTACATTGTGA 1692 0.4167 MVQDIPSCCHIFFFLLLLLRPSSVSPLYDGPLYDFTAYTECKEHPEKPLYGGGIFKRESQYSQSGAVVEDRFASKAVNGYMPSLLLNNLTQATIYSFSIWVRVQGSNSAMIRASLQGEKDAFVCIGTVSAKSGCWSFLKGGFVLDSPSNLSTIFIQNAGGNDVNIDIASPSLQPFTKQQWRINQEYIINHQRKRAVTIHVSDAKGMKLQGAAISIEQISKDFPIGSAIAKTILGNLPYQNWFVKRFNAAVFENELKWYATEPHQGQVNYTISDQMLQFLRANKIIARGHNIFWEDPKYTPAWVLNLTGIQLRSAVNSRIHSLMNQYKEEFIHWDVSNEMLHFDFYEQKLGPDATLHFFETAHKSDPLATLFMNDFNVVETCSDVNSTVDAFISKIRELQQNGVFMDGIGLEGHFTTPNPPLIRAILDKLATLDLPIWLTEVDISKTLDQDTQAIYLEQVLREGFSHPSVNGIMLWTALHPNGCYQMCLTDNDFRNLPSGDVVDKLLEEWHTGLVEGVADKQGSHSFYGFLGEYRISVKYGNRTTSSTFSLSGGDETRHFTVTL* 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2372 563 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 209 505 IPR001000 GO:0004553|GO:0005975
Lja1g2372 563 SUPERFAMILY (Trans)glycosidases 209 511 IPR017853 -
Lja1g2372 563 PANTHER GLYCOSYL HYDROLASE 13 562 IPR044846 GO:0004553|GO:0005975
Lja1g2372 563 Gene3D Glycosidases 211 515 - -
Lja1g2372 563 SUPERFAMILY Galactose-binding domain-like 78 158 IPR008979 -
Lja1g2372 563 Gene3D - 50 169 - -
Lja1g2372 563 PANTHER GLYCOSYL HYDROLASE FAMILY 10 PROTEIN 13 562 - -
Lja1g2372 563 PRINTS Glycosyl hydrolase family 10 signature 368 379 IPR001000 GO:0004553|GO:0005975
Lja1g2372 563 PRINTS Glycosyl hydrolase family 10 signature 401 413 IPR001000 GO:0004553|GO:0005975
Lja1g2372 563 PRINTS Glycosyl hydrolase family 10 signature 330 341 IPR001000 GO:0004553|GO:0005975
Lja1g2372 563 PRINTS Glycosyl hydrolase family 10 signature 286 298 IPR001000 GO:0004553|GO:0005975
Lja1g2372 563 SMART glyco_10 255 506 IPR001000 GO:0004553|GO:0005975
Lja1g2372 563 Pfam Glycosyl hydrolase family 10 217 476 IPR001000 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2372 Lja-Chr1 27398943 27401929 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2372 22 563 Glycoside Hydrolase AT4G38650 63.303 0.0 727
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2372 - - gmx:100806005 918.302
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2372 1 27398943 27401929 Lja1g2372 1 27398943 27401929 ECH