Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2365 ATGACGGGTGACAAGAAAAAGCCGATCCACGCCATCACCACATGGGTGCGGCGGCAGCCACCGAAGGTCAAGGCCTTTCTCGCCGTCGTTTCTGGCATGGCGGCTTTGGTGGTTCTCCGCTTCATTGTTCACGACCACGACAACCTCTTCGTAGCCGCTGAGGCTGTCCACTCCCTTGGAATTTCTCTTCTCATCTACAAGCTCATCAAAGAGAAGACATGTGCCGGATTGTCCCTAAAATCCCAGGAATTAACAGCTATGTTTCTAGCTGTCAGGCTGTACTGCAGTTTTGTCATGGAATATGATATACACACTTTGCTTGATTTGTCTACTTTGGCAACAACATTGTGGGTTATATACATGATTCGTTTTAATTTGAAGTCTAGTTACATGGAGGAGAAGGACAACTTTGCAATATACTATGTGGTGGCACCCTGTGCTGTCTTAGCCTTGTTTATTCATCCATCAACTTCTCATCATTTATTGAACAGAATTTTTTGGGCGTTCTGTGTTTATCTGGAAGCCGTGTCAGTGCTACCCCAATTGCGAGTCATGCAGAACACCCAAATTGTTGAGCCATTCACAGCACATTATGTATTTGCATTGGGTGTTGCAAGATTCCTGAGCTGTGCTCATTGGGTTCTTCAGGTGTTAGATAGTCGTGGACATTTGTTGGTTGCCTTGGGGTATGGTTTATGGCCTTCAATGGTTCTTATCTCAGAAATTGTACAGACTTTTATATTAGCAGATTTCTGTTACTATTATGTCAAAAGTGTTTTCGGGGGACAGCTTGTTCTCCGTCTTCCCTCTGGAGTGGTGTGA 822 0.4477 MTGDKKKPIHAITTWVRRQPPKVKAFLAVVSGMAALVVLRFIVHDHDNLFVAAEAVHSLGISLLIYKLIKEKTCAGLSLKSQELTAMFLAVRLYCSFVMEYDIHTLLDLSTLATTLWVIYMIRFNLKSSYMEEKDNFAIYYVVAPCAVLALFIHPSTSHHLLNRIFWAFCVYLEAVSVLPQLRVMQNTQIVEPFTAHYVFALGVARFLSCAHWVLQVLDSRGHLLVALGYGLWPSMVLISEIVQTFILADFCYYYVKSVFGGQLVLRLPSGVV* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2365 273 PANTHER ER LUMEN PROTEIN RETAINING RECEPTOR 5 272 IPR000133 GO:0006621|GO:0016021|GO:0046923
Lja1g2365 273 PANTHER ER LUMEN PROTEIN-RETAINING RECEPTOR C28H8.4-RELATED 5 272 - -
Lja1g2365 273 Pfam ER lumen protein retaining receptor 73 215 IPR000133 GO:0006621|GO:0016021|GO:0046923
Lja1g2365 273 PRINTS ER lumen protein retaining receptor signature 167 187 IPR000133 GO:0006621|GO:0016021|GO:0046923
Lja1g2365 273 PRINTS ER lumen protein retaining receptor signature 49 68 IPR000133 GO:0006621|GO:0016021|GO:0046923
Lja1g2365 273 PRINTS ER lumen protein retaining receptor signature 76 96 IPR000133 GO:0006621|GO:0016021|GO:0046923
Lja1g2365 273 PRINTS ER lumen protein retaining receptor signature 203 221 IPR000133 GO:0006621|GO:0016021|GO:0046923
Lja1g2365 273 PRINTS ER lumen protein retaining receptor signature 189 203 IPR000133 GO:0006621|GO:0016021|GO:0046923
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2365 Lja-Chr1 27349442 27351397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2365 6 273 Miscellaneous Gene Families AT2G21190 87.687 0.0 498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2365 - - lja:Lj1g3v3343920.1 539.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2365 1 27349442 27351397 Lja1g2365 1 27349442 27351397 ECH