Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2346 ATGCCTGCTGTAGCTTGTTGCGTCGACGCATTCGCCGGTGACATCTCTTTCCCGGCGCCGGTTGATTTCACCGGCGTTCCGCCGCCAACCACCGACGACAGCCACTGGTCTCCCACCCTCTCCTCCGCCCTGTACAACGTCGACGGCTGGGGCGGACCTTACTTCGCCGTGAATTCCACCGGGAACATCTCGGTCCGGCCACATGGCGGTGAGACGCTGTCTCACCAGGAGATTGATCTGTTGAAGATCGTGAAGAAGGCCTCTGATCCCAAATCTTGCGGTGGTCTCGGTCTCCAGCTTCCGCTCATTGTACGGTTCCCTGATGTTTTGAAGAACCGATTGGAGTCTCTGCAATCGGCGTTTGACTATGCTGTCCAGTCTGAGGGGTATGGCTCCCATTACCAGGGGGTTTACCCGGTGAAATGCAACCAGGACAGGTTCGTGGTGGAGGACATCGTGAGATTCGGTTCTTCGTTCCGGTTCGGTTTGGAGTCAGGGTCTAAACCAGAGCTTCTCATGGCTATGAGTTGTCTATGCAAAGGCAACGCAGAAGCGCTTCTCATCTGTAATGGATTCAAGGACGCCGAGTACATTTCCCTCGCCCTGGCTGCGAGGAAGCTGGCTCTGAACTCCGTGATTGTGCTGGAGCAAGAGGAGGAGGTTGACCTGATCATTGATCTGAGCAACAAGATGCACATTCGCCCTGTGATTGGAATGCGGGCGAAGCTGCGGACCAAGCATTCGGGCCATTTCGGTGGGACTTCCGGTGAGAGGGGGAAATTCGGGCTCACAACTGCTCAGATTCTGAGGGTTGTGAAGAAGCTTGAGCACGCTGGCATGCTGGATTGCCTGCAACTCCTGCATTTTCACATAGGCTCTCAGATTCCTTCCACCGCGTTGCTCGCTGATGGTGTGGGAGAAGCTGCGCAGATCTATTGTGAACTGGTTCGTCTCGGGGCTCAAATGCGAGTCATTGATATTGGAGGTGGCCTCGGCATTGATTACGACGGTACAAAATCTAGTGACTCTGATATCTCTGTTGGGTATGGTCTTCAAGAGTATGCCACTGCGGTGGTTCGCGCCGTTCAGGGTGTCTGCGACCGGAGGTCCATCAAGCACCCGGTTATCTGCAGTGAGAGCGGCAGGGCTATTGTTTCTCACCATTCTGTGTTGGTGTTCGAAGCTGTTGGTGCTAGCAGCTATGGAGCGCCCCCTGCATTCTCATCTCTGGCTCTGCAGTACTTGGTGGAGGGGCTCTCGGAGGAAGCTCGTGCTGATTACCGCAACCTCTCTGATGCGGCGATCAGGGGAGAACATGAGACCTGCTTGCTGTACACTGAGGAGATGAAACGGCGCTGCGTGGAGGAGTTTAAGCAAGGGCTTTTGGGAATGGAAGAGCTTGCCGGCGTGGAGGGGTTGTGTGATTTGGTAAGGAAGACGGTGGGGGAGGCTGATCCAGTTCGGAGGTACCACGTGAACCTCTCCATTTTCACCTCTATCCCTGACGTGTGGAGCATTGATCAGGTGTTTCCCATTATCCCCATTCACCGCCTCGATGAGAAGCCCACTGTGAAAGGCATCCTCTCTGATCTGACCTGTGACAGTGATGGGAAGATTGACAAGTTCATCAACGGAGAGTCAAGCTTGGCGATGCACGAGTTGGAAGGTGGGAGGAAGTACTATCTGGGAATGTTCTTGGGCGGTGCTTATGAGGAGGCGCTTGGTGGTTACCACAACTTGTTTGGAGGTCCCAGCGTGGTTCGGGTGTTGCAGAGCGAAGGTCCACACAGCTTCGCGGTGACGCGTGCAATGCCGGGTCCTTCCAATGGAGACGTACTTCGAGTGATGCAGCACCAGCCTGAGCTCATGTTTGAGACTCTCAAGCACCGCGCAGAGGAGTCTGTGCATGATGATGAGCTCACTGCTGCGGCTCTCGCCACAGCCCTGGCTCGCTCGTTCCACAACATGCCTTATCTGGTAACTGCTGCTGACCATGCTGGAGAGGATGAGCATGATCAATGGTCTTATTGCATTGCTTGA 2040 0.549 MPAVACCVDAFAGDISFPAPVDFTGVPPPTTDDSHWSPTLSSALYNVDGWGGPYFAVNSTGNISVRPHGGETLSHQEIDLLKIVKKASDPKSCGGLGLQLPLIVRFPDVLKNRLESLQSAFDYAVQSEGYGSHYQGVYPVKCNQDRFVVEDIVRFGSSFRFGLESGSKPELLMAMSCLCKGNAEALLICNGFKDAEYISLALAARKLALNSVIVLEQEEEVDLIIDLSNKMHIRPVIGMRAKLRTKHSGHFGGTSGERGKFGLTTAQILRVVKKLEHAGMLDCLQLLHFHIGSQIPSTALLADGVGEAAQIYCELVRLGAQMRVIDIGGGLGIDYDGTKSSDSDISVGYGLQEYATAVVRAVQGVCDRRSIKHPVICSESGRAIVSHHSVLVFEAVGASSYGAPPAFSSLALQYLVEGLSEEARADYRNLSDAAIRGEHETCLLYTEEMKRRCVEEFKQGLLGMEELAGVEGLCDLVRKTVGEADPVRRYHVNLSIFTSIPDVWSIDQVFPIIPIHRLDEKPTVKGILSDLTCDSDGKIDKFINGESSLAMHELEGGRKYYLGMFLGGAYEEALGGYHNLFGGPSVVRVLQSEGPHSFAVTRAMPGPSNGDVLRVMQHQPELMFETLKHRAEESVHDDELTAAALATALARSFHNMPYLVTAADHAGEDEHDQWSYCIA* 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2346 679 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 45 590 IPR009006 GO:0003824
Lja1g2346 679 PIRSF ARGDC 25 662 IPR002985 GO:0006527|GO:0008295|GO:0008792
Lja1g2346 679 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 signature 2. 319 332 IPR022657 -
Lja1g2346 679 PRINTS Arginine decarboxylase signature 106 121 IPR002985 GO:0006527|GO:0008295|GO:0008792
Lja1g2346 679 PRINTS Arginine decarboxylase signature 238 260 IPR002985 GO:0006527|GO:0008295|GO:0008792
Lja1g2346 679 PRINTS Arginine decarboxylase signature 493 514 IPR002985 GO:0006527|GO:0008295|GO:0008792
Lja1g2346 679 PRINTS Arginine decarboxylase signature 188 203 IPR002985 GO:0006527|GO:0008295|GO:0008792
Lja1g2346 679 PRINTS Arginine decarboxylase signature 366 383 IPR002985 GO:0006527|GO:0008295|GO:0008792
Lja1g2346 679 PRINTS Arginine decarboxylase signature 214 235 IPR002985 GO:0006527|GO:0008295|GO:0008792
Lja1g2346 679 PRINTS Arginine decarboxylase signature 518 543 IPR002985 GO:0006527|GO:0008295|GO:0008792
Lja1g2346 679 PRINTS Arginine decarboxylase signature 568 589 IPR002985 GO:0006527|GO:0008295|GO:0008792
Lja1g2346 679 PRINTS Arginine decarboxylase signature 130 144 IPR002985 GO:0006527|GO:0008295|GO:0008792
Lja1g2346 679 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 568 581 IPR000183 GO:0003824
Lja1g2346 679 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 138 156 IPR000183 GO:0003824
Lja1g2346 679 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 162 174 IPR000183 GO:0003824
Lja1g2346 679 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 376 395 IPR000183 GO:0003824
Lja1g2346 679 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 281 294 IPR000183 GO:0003824
Lja1g2346 679 SUPERFAMILY Alanine racemase C-terminal domain-like 484 592 IPR009006 GO:0003824
Lja1g2346 679 TIGRFAM speA: arginine decarboxylase 36 659 IPR002985 GO:0006527|GO:0008295|GO:0008792
Lja1g2346 679 Gene3D - 405 486 - -
Lja1g2346 679 PANTHER ARGININE DECARBOXYLASE 1 676 - -
Lja1g2346 679 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 138 156 IPR022653 -
Lja1g2346 679 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 131 386 IPR022644 GO:0003824
Lja1g2346 679 SUPERFAMILY PLP-binding barrel 106 388 IPR029066 -
Lja1g2346 679 CDD PLPDE_III_ADC 97 589 IPR002985 GO:0006527|GO:0008295|GO:0008792
Lja1g2346 679 Gene3D Alanine racemase 107 388 IPR029066 -
Lja1g2346 679 PANTHER ARGININE DECARBOXYLASE 1 676 IPR002985 GO:0006527|GO:0008295|GO:0008792
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2346 Lja-Chr1 27172121 27174870 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2346 K01583 - gmx:100793552 1090.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2346 1 27172121 27174870 Lja1g2346 1 27172121 27174870 ECH