Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2341 ATGGCACTCCTCAAGTGCACTTTTCTCCTCTGCATCATCACGTTTTTCCTGTCCCTGCTCACTTTTCATACCACCGCCGGTAGGCACGATTACGGTGATGCATTGTCCAAGGCGATCCTCTTCTTCGAGGGGCAGCGATCGGGGTTTCTGCCGCAGGACCAGAGGATGAACTGGCGGGGGAATTCCGGACTCAGCGACGGTTGGACTCACAAAGTCGACCTCACCGGCGGTTACTACGACGCCGGTGATAACGTCAAATTCGGGTTTCCGATGGCGTTTTCCACGACAATGCTGTCGTGGAGCGTCATTGAATTCGGAGATATAATGCCTCCTCAAGAGCTTAGAAACGCATTGGTGGCTATTCGTTGGAGTACTGATTATTTGCTCAAAACCATTTCTCATCCCAACCGCATCTTCGTTCAGGTGGGTGATCCAATTGCAGACCACAACTGTTGGGAGAGGCCTGAAGACATGGACACAAGCAGGACAGCTTATGTGGTTGATGCACCCAACCCTGCTTCTGATATCGCCGGCGAAACTGCAGCTGCACTGGCAGCTGCATCCATGGCATTCAAGTCATCTGATCCCGGTTATTCAGAGACCTTGCTCCGTAATGCTATTAAGGCCTTTCAATACGCTGATAACTATAGGGGTGCCTACAGTGACAATGCTGATGTTCACAATGCTGTCTGCCCTTTTTATTGTGATTTTGGTGGATACCAGGACGAATTGTTATGGGGAGCAGCATGGTTAAGAAGGGCTACACAAGGTGACAATTTCCTCAATTACATTCAAAGCAATGGCCAAACGATGGGTGCGGAAGAAAGTATAAATGAGTTTGGCTGGGAAAACAAGCATGCTGGCCTTAATGTTCTTGTCTCCAAGGAAGTCTTAGAAGGGAAAGTATACTCTCTTGAATCTTACAAGACCTCAGCAGAGAGCTTCTTATGCACATTGATACCTGAATCATCAAGTTCACACATAGAGTACTCTCCTGGTGGGCTCATATACAAGCCCGGAGGCAGCAACTTACAGCACGCAACTTCAATTGTTTTCCTTCAATTGGTGTATGCAAATTACCTTTCCCGCACCTCACAAACCGTCAATTGTGGGAATGTCCTTGTTAGTCCACAAACACTTCGCCAACGTGCTAAACAGCAAGTTGATTACATCTTAGGAGACAATCCAATGGGTTTATCCTACATGGTTGGCTATGGAGACAAGTATCCTCAACGCATTCACCATCGCGGCTCGTCTTTACCCTCTATTAAGGATCATCCTCGTCACATTGCATGCCATGATGGTACACCCTACTTCAATTCAACAAATCCTAACCCCAATGTTCTTGTAGGAGCTGTTGTTGGAGGACCTGAAAAAGATGATATCTATGTGGATGATAGGGCTGAGTTTAGGAAGTCTGAGCCAACCACATACATCAATGCGCCATTTGTTGGGATTTTAGCATACTTTGCTGCTAATCCCAATCCTTAA 1491 0.4702 MALLKCTFLLCIITFFLSLLTFHTTAGRHDYGDALSKAILFFEGQRSGFLPQDQRMNWRGNSGLSDGWTHKVDLTGGYYDAGDNVKFGFPMAFSTTMLSWSVIEFGDIMPPQELRNALVAIRWSTDYLLKTISHPNRIFVQVGDPIADHNCWERPEDMDTSRTAYVVDAPNPASDIAGETAAALAAASMAFKSSDPGYSETLLRNAIKAFQYADNYRGAYSDNADVHNAVCPFYCDFGGYQDELLWGAAWLRRATQGDNFLNYIQSNGQTMGAEESINEFGWENKHAGLNVLVSKEVLEGKVYSLESYKTSAESFLCTLIPESSSSHIEYSPGGLIYKPGGSNLQHATSIVFLQLVYANYLSRTSQTVNCGNVLVSPQTLRQRAKQQVDYILGDNPMGLSYMVGYGDKYPQRIHHRGSSLPSIKDHPRHIACHDGTPYFNSTNPNPNVLVGAVVGGPEKDDIYVDDRAEFRKSEPTTYINAPFVGILAYFAANPNP* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2341 496 Pfam Glycosyl hydrolase family 9 31 487 IPR001701 GO:0004553|GO:0005975
Lja1g2341 496 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 463 481 IPR033126 -
Lja1g2341 496 Gene3D - 28 493 IPR012341 GO:0005975
Lja1g2341 496 PANTHER ENDO-1,4-BETA-GLUCANASE 12 495 - -
Lja1g2341 496 SUPERFAMILY Six-hairpin glycosidases 13 492 IPR008928 GO:0005975
Lja1g2341 496 PANTHER ENDOGLUCANASE 24 12 495 - -
Lja1g2341 496 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 390 416 IPR018221 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2341 Lja-Chr1 27121178 27124682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2341 3 493 Glycoside Hydrolase AT1G70710 59.470 0.0 610
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2341 K01179 - gmx:100799911 849.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2341 1 27121178 27124682 Lja1g2341 1 27121178 27124682 ECH