Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2329 ATGGCGTCTTCCTCGCGAGCAAGGAGCAGCTCGCCGTTTTCACACCGAAAACCCTCGACTCCTTACTCTTCCACTTCTTCCTCTTCCTCCTTCATCACCGGAGGAAGGTTAATGCCTCGCTCCAGCACTTCCTCGACATCGTCGTTTTTCAACCCCGGAGGCCGATCCACCACTCCGAGTCGCGGTCGCAGCGAGTCAACGTATCACGGTTCGCGCGGTTACGCTGAACATTCTCCAGTCGCGTTCGCGGCGGAGGAGCTGATTTCGGAGCCTCTGGATGCTTCCAGGTCCGGGGATAGCATTTCGGTGACGATTCGGTTTCGGCCATTGAGTGAGAGGGAGTATCAGAGAGGGGACGAGATTGCGTGGTATGCTGATGGTGATAAAATTGTCAGAAATGAGTATAATCCAGCTACTGCTTATGCATTTGATAAAGTTTTTGGACCACATACCATTTCAGAAGAGGTGTATGAAGTCGCAGCTAAACCTGTGGTGAAGGCTGCTATGGAGGGCATCAATGGAACGGTGTTTGCCTATGGTGTGACGAGTAGTGGTAAGACGCATACTATGCATGGAGATCAAAATTCTCCTGGTATCATACCATTGGCTATAAAGGATGTTTTCAGCATGATCCAAGATACTCCAGGAAGAGAATTCCTGCTCCGGGTGTCATATCTAGAAATATATAACGAGGTGATAAATGATTTGCTTGACCCAACTGGTCAAAACTTGCGAGTTAGAGAAGATGCACAGGGAACTTATGTGGAGGGTATGAAGGAAGAAGTTGTTTTATCTCCTGGACATGCACTTTCTTTTATTGCTGCTGGAGAAGAACATCGTCATGTTGGATCGAACAATTTTAATCTATTTAGCAGCCGGAGTCACACAATATTTACACTGATGATAGAAAGCAGTGCCCATGGTGATGATTATGATGGAGTGATCTTCTCTCAGCTTAACTTGATTGATTTGGCTGGATCTGAAAGCTCAAAAACCGAAACAACTGGATTAAGAAGAAAAGAAGGATCTTACATCAACAAAAGTCTTCTGACACTTGGAACTGTTATAGGAAAACTGAGCGAGGGAAAGGCATCTCATGTTCCATATCGAGATTCAAAGCTAACCCGCCTCCTGCAATCTTCTCTTAGTGGGCATGGCCATGTTTCACTTATATGCACAGTAACTCCAGCATCCAGTAATATGGAGGAAACTCATAATACCTTGAAGTTTGCTAGCAGGGCAAAAAGAGTAGAAATATATGCATCACGTAATAAGATTATTGATGAAAAGTCTCTGATCAAGAAATACCAAAGAGAAATTTCTGTCCTCAAACTTGAACTTGATCAACTAAAAAAGGGGATTCTTGTTGGTGTCAATCATGAGGAGATTTTGACCTTAAAGCAGAAGTTGGAAGAAGGTCAAGTAAAATTGCAATCAAGATTGGAAGAGGAGGAGGATGCCAAGGCTGCTCTTTTGAGTAGGATCCAGAGGCTAACCAAACTCATTCTGGTTTCCTCGAAGAATGCAATTCCTGGATATCTGACTGACATTCCTAGCCACCAGCGAAGTCTCTCGGTTGGTGAGGAAGATAAAATTGATTCCTTGCGTGAAGGTCTGTTGATTGAAAATGGGAGCCAAAAAGATGCTTCTGCAGGGTCATCACATGTATTTCATGATGCTAGACATAAAAGATCATCAGGTAGATGGAATGACGAGTTTTCCCCTACTAGCAGTACAATTACTGAAGCAACCCAAGCTGGGGAACTGATCAGCAGAACAAAACTGGCAGCGGGTGGGATGACAATGTCTGATCAGATGGATCTTCTTGTTGAGCAAGTCAAGATGCTAGCTGGAGATATTGCTTTCAGTACCAGCACTCTGAAGCGTCTGACAGAGCAGTCTGTAAATGATCCTGAAGGCTCAAAAACCCAGATTGAGAACTTAGAACGTGAGATCCAAGAAAAAAGGAAGCAATTGGAAATGTTAGAACAACGAATAAATGAGACTGGTGAATCTTCATTGGCAAATTCATCACTAGTTGAAATGCAGCAGACTGTCTCAAGATTGATGACTCAGTGTAATGAAAAAGCCTTTGAGCTGGAGATAAAATCTGCTGACAATCGTGTCCTTGAGGAACAGCTAAATGATAAGTGTTCTGAAAACAGAGAGTTGCAAGAAAAGGTGAAGCTGCTAGAGCAGCAACTGGCAGCAGTTACTAGTGGCACATCTTTATTGTCTACTTCACAGTGTGCATCCGATGAACACATTGACGAGTTGAAAAAGAAAATACAATCCCAGGAAATTGAAAATGAAAATCTGAAGCTGGAACAAGTTTACTTGTCAGAAGAGAATAGTGGGTTGCGTGTGCAGAATCAGAAACTTTCTGAAGAAGCTTCTTATGCTAAAGAATTAGCCTCTGCTGCTGCTGTGGAGCTAAAGAATTTGGCTGGGGAAGTGACAAAGCTTTCATTGCAGAATGCAAAGTTGGAAAAAGAATTGATGGCGGCCCGAGACCTGGCCAACTCTCGTAGTGCTGCAGTGCTAACGGCTAATGGTGTCAACCGTAAGTACAATGACACAAGATCCGGGAGGAAGGGGAGGGTTTCTTGTCGTGCTAATGAAATTTCGGGAGCTGGTCTGGATGACTTTGGGTCATGGAGTCTTGACGCTGAGGATTTGAAGATGGAGCTTCAGGCTAGGAAACAACGAGAGGCAGCTCTTGAGGCTGCATTATCTGAGAAAGAATATGTGGAAGAGGAGTACAGGAAAAAGGCTGAAGAGGCCAAGAAAAGAGAAGAAGCATTGGAGAATGATTTAGCAAATATGTGGGTCCTTGTTGCGAAGTTAAAAAAAGGAGGTGCTGTCCCAGAATCAAATATTGACAAAAAATATGATGGTGCAGAAAATATAAATGATCGAAAAACTAATGGCATTGAAAGTAATAATGTTCCCAAGGAGCAGCTTTTGGATGTATCAAAGCCAGATGATGGAATTCCTAAGGAAGAACCCTTGGTTGTTCGCCTCAAGGCACGCATGCAAGAGATGAAGGAAAAAGAACTCAAGTACATTGGGAATGGCGATGCCAATTCCCATGTTTGTAAAGTATGCTTTGAATCACCAACTGCAGCTATTCTTCTTCCATGCCGACATTTTTGTTTGTGTAAATCGTGCTCACTTGCTTGTTCTGAGTGCCCAATATGCCGCACAAATATTACAGATAGGCTTTTTGCTTTTACATCTTGA 3243 0.4339 MASSSRARSSSPFSHRKPSTPYSSTSSSSSFITGGRLMPRSSTSSTSSFFNPGGRSTTPSRGRSESTYHGSRGYAEHSPVAFAAEELISEPLDASRSGDSISVTIRFRPLSEREYQRGDEIAWYADGDKIVRNEYNPATAYAFDKVFGPHTISEEVYEVAAKPVVKAAMEGINGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSMIQDTPGREFLLRVSYLEIYNEVINDLLDPTGQNLRVREDAQGTYVEGMKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLFSSRSHTIFTLMIESSAHGDDYDGVIFSQLNLIDLAGSESSKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSNMEETHNTLKFASRAKRVEIYASRNKIIDEKSLIKKYQREISVLKLELDQLKKGILVGVNHEEILTLKQKLEEGQVKLQSRLEEEEDAKAALLSRIQRLTKLILVSSKNAIPGYLTDIPSHQRSLSVGEEDKIDSLREGLLIENGSQKDASAGSSHVFHDARHKRSSGRWNDEFSPTSSTITEATQAGELISRTKLAAGGMTMSDQMDLLVEQVKMLAGDIAFSTSTLKRLTEQSVNDPEGSKTQIENLEREIQEKRKQLEMLEQRINETGESSLANSSLVEMQQTVSRLMTQCNEKAFELEIKSADNRVLEEQLNDKCSENRELQEKVKLLEQQLAAVTSGTSLLSTSQCASDEHIDELKKKIQSQEIENENLKLEQVYLSEENSGLRVQNQKLSEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELMAARDLANSRSAAVLTANGVNRKYNDTRSGRKGRVSCRANEISGAGLDDFGSWSLDAEDLKMELQARKQREAALEAALSEKEYVEEEYRKKAEEAKKREEALENDLANMWVLVAKLKKGGAVPESNIDKKYDGAENINDRKTNGIESNNVPKEQLLDVSKPDDGIPKEEPLVVRLKARMQEMKEKELKYIGNGDANSHVCKVCFESPTAAILLPCRHFCLCKSCSLACSECPICRTNITDRLFAFTS* 1081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2329 1080 MobiDBLite consensus disorder prediction 1 72 - -
Lja1g2329 1080 MobiDBLite consensus disorder prediction 546 579 - -
Lja1g2329 1080 MobiDBLite consensus disorder prediction 1 67 - -
Lja1g2329 1080 Coils Coil 890 942 - -
Lja1g2329 1080 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 100 452 IPR027417 -
Lja1g2329 1080 Coils Coil 756 776 - -
Lja1g2329 1080 Coils Coil 433 453 - -
Lja1g2329 1080 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1007 1078 IPR013083 -
Lja1g2329 1080 Coils Coil 642 672 - -
Lja1g2329 1080 Gene3D Kinesin motor domain 92 447 IPR036961 -
Lja1g2329 1080 PANTHER CENTROMERE PROTEIN E 58 1041 - -
Lja1g2329 1080 ProSiteProfiles Kinesin motor domain profile. 100 417 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja1g2329 1080 ProSitePatterns Kinesin motor domain signature. 317 328 IPR019821 GO:0003777|GO:0005524|GO:0007018
Lja1g2329 1080 ProSiteProfiles Zinc finger RING-type profile. 1033 1068 IPR001841 -
Lja1g2329 1080 Coils Coil 707 741 - -
Lja1g2329 1080 Coils Coil 812 839 - -
Lja1g2329 1080 PANTHER KINESIN-LIKE PROTEIN KIN-7D, MITOCHONDRIAL 58 1041 - -
Lja1g2329 1080 SMART kinesin_4 98 425 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja1g2329 1080 Coils Coil 467 501 - -
Lja1g2329 1080 MobiDBLite consensus disorder prediction 554 569 - -
Lja1g2329 1080 Pfam Kinesin motor domain 106 417 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja1g2329 1080 SUPERFAMILY RING/U-box 1032 1073 - -
Lja1g2329 1080 Pfam Zinc finger, C3HC4 type (RING finger) 1031 1073 - -
Lja1g2329 1080 CDD KISc_CENP_E 100 417 - -
Lja1g2329 1080 PRINTS Kinesin heavy chain signature 318 336 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja1g2329 1080 PRINTS Kinesin heavy chain signature 171 192 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja1g2329 1080 PRINTS Kinesin heavy chain signature 285 302 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja1g2329 1080 PRINTS Kinesin heavy chain signature 367 388 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2329 Lja-Chr1 26976121 26986732 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2329 36 1080 Miscellaneous Gene Families AT4G39050 72.102 0.0 1489
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2329 K11498 - gmx:100812720 1750.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2329 1 26976121 26986732 Lja1g2329 1 26976121 26986732 ECH