Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2322 ATGGGTGCTGCTTGTTGTGTTGCTGCCAAAGATAAAACTGTACAAAGTGGATCAACCAGTGAGGTATTGCATAGGAATACTCGTTGTTCTCCGACATGGAGCTTTAGGTGGGATCATCGTGGAGGGCGTGTAGCCGGTGAAGATACATCTATAAATTGGTTTTCTGATGGAATCAGCAGAAATGATGGATCAGAGAATAAAAATGAATCGGCGTATGTCTCCGAGGATGGAAGTCCATTGCAGAATTATCAACGGAACAGATGCCTAAAATCCCCTATTTCTGAAGGAACTAATGTACATGTGAGAAATTCACCTACAGACCAATCTATTTCAAGGACTGTCTCTATGGATATGAACGTGGAACAGGGGAATGAGTTGACTGAATCATCAATAGTATCTTGTCCATCTCCCACAAAACCATCATTGCCTTCAACTTCATTGTCAGCATCTCCTTTATCATCCCAATGTCACATGCTTCCATCCAGCTTGACTCCATCAAGGTGGCCCTACCGTTCCCCTGGACACCAGCTGTTACGGCAAGCTTCTGATAGCCGAATCCCAGCATATAAGTCACCCAGCAGGTTCTCTCTGTCTGAAGAAAGGCCCATGTTTCCTACTTGGAGTAATGAATCAGGTATGCGCTCCCATGGGGGATCTTCAGATGGTTGGTCTATACCGGGCTTTCCTGAGATGACGGGAACTCCCCATAGAGACAGATGGTCATTTGACAGCGAGTCCTTTAGTTTTAATCGCGAAAGGTTAGCTAGATCCCGTAGTTGGCTTTCAGCTTTTTCTCCAGTTGATTTGCAAACATGTGGTGTTTGCTCAAAGCTTTTGACAGAGATGTCTTGGAGAAGTAATAATCTTTCTGTAGTTGCTGTTCTTATCTGTGGACACGTATATCATGCTGAGTGTTTGGAGAGTATGACACATGACATCAATAAGTATGATCCAGCTTGCCCAGTGTGCACTTTTGGTGAGAAACAAGCTATGAAGTTGGCTGAAAAAGCTTTGAAAGCTGAAATGGATGTGAAGGCTAGAAACAAGAAATCAAAGAATCGGGTTGTGGACAGTGATATTGATGATGATTCTGTTGTGTCCGATCACCTCAAAGGGAGAGGGCTTAAAGGTAAAGGACCTAGGGCTGACTCCAGTTCCAGTGGGAAAAGCTCCTTTGGGAAACCTTTTTTGAGGCGACACTTTACGTTCGGCTCAAAGGGTTCCAGATCCATGTTAGATAATCACCCCACAAGAAAGAAGGGTTTCTTTTGGGCAAAATCTAGCAAACAATAA 1293 0.4393 MGAACCVAAKDKTVQSGSTSEVLHRNTRCSPTWSFRWDHRGGRVAGEDTSINWFSDGISRNDGSENKNESAYVSEDGSPLQNYQRNRCLKSPISEGTNVHVRNSPTDQSISRTVSMDMNVEQGNELTESSIVSCPSPTKPSLPSTSLSASPLSSQCHMLPSSLTPSRWPYRSPGHQLLRQASDSRIPAYKSPSRFSLSEERPMFPTWSNESGMRSHGGSSDGWSIPGFPEMTGTPHRDRWSFDSESFSFNRERLARSRSWLSAFSPVDLQTCGVCSKLLTEMSWRSNNLSVVAVLICGHVYHAECLESMTHDINKYDPACPVCTFGEKQAMKLAEKALKAEMDVKARNKKSKNRVVDSDIDDDSVVSDHLKGRGLKGKGPRADSSSSGKSSFGKPFLRRHFTFGSKGSRSMLDNHPTRKKGFFWAKSSKQ* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2322 430 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 257 325 IPR013083 -
Lja1g2322 430 PANTHER BNAA09G43140D PROTEIN 1 425 - -
Lja1g2322 430 ProSiteProfiles Zinc finger RING-type profile. 272 324 IPR001841 -
Lja1g2322 430 SUPERFAMILY RING/U-box 271 324 - -
Lja1g2322 430 SMART ring_2 272 323 IPR001841 -
Lja1g2322 430 PANTHER EXPRESSED PROTEIN 1 425 - -
Lja1g2322 430 MobiDBLite consensus disorder prediction 367 430 - -
Lja1g2322 430 MobiDBLite consensus disorder prediction 127 149 - -
Lja1g2322 430 MobiDBLite consensus disorder prediction 56 79 - -
Lja1g2322 430 CDD RING-H2 272 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2322 Lja-Chr1 26909461 26913313 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2322 - - gmx:100778123 654.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2322 1 26909461 26913313 Lja1g2322 1 26909461 26913313 ECH