Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2320 ATGGTGAAGGAGACAACGTACTACGACATTTTAGGGGTCAACGTTGATGCATCCCCTGCAGAGATCAAGAAGGCTTATTATATCAAGGCTAGGATAGTTCACCCTGATAAAAATCCAGGAGATTCCAGGGCTGCAGAAAATTTTCAGATACTTGGTGAGGCTTACCAGATTTTGAGTGATCCCAAGAAGCGTGAAGCATATGATAAGCATGGAAAGGCAGGGTTACCACAAGAATCCATGATAGATCCAACAGCTGTATTTGGAATGCTTTTTGGAAGTGAATTGTTTGAAGATTATATTGGAAAACTTGCAATGGCTTCTTTATCATCTATAGAAGCTGAGGAAGTCTCACTAGATCTTGAAGTTCGTATGCAGAGAATTCAAGAAAGGATGAAAACATGGCAGAAGGAAAGGGAACAAAAGCTTATAGTGACCCTGAAAGATCGCTTACAGCCTTTTGTTGATGGTCGAACAGATGAATTTGTATCGTGGGGAAATTCAGAAGCTTGTGACCTATCAAACGCTGCTTTTGGAGAGGCCATGCTACATACAATTGGTTATATCTATACCCGAAAAGCTGCCAGAGAACTTGGAAAGGATAAGCGGTATATGAAGGTTCCTTTTTTGGCAGAGTGGGTACGAGACAAAGGACACTGGATAAAGTCACAAGTGATGGCAGCCTCAGGTGCCGTGTCCTTAATTCAAATACACGAAGAGCTCAAGAAGCTAAACCAAGGAGAAAACAAGGAAGAAAACTTGGTAAAAGCTATCGAGAATAAAAAGGATGCCATGATAAATTCCCTTTGGCAGATCAATGTGATTGATATTGAATCAACCCTGTCCCATGTCAGCCAAGCTGTTCTTAAAGATCCTGGTGCTTCCAAAGATGTTCTAAGGTTACGAGCCAAAGCGTTGAAGAAGTTGGGAACTATCTTTCAAGGTGCCAAGGCTGCTTACAATAGAGAAAACAGTCTTCGCCACGAAAGTGACAGACCAAGAGACACGTCTTCTTCATCATAG 1020 0.4176 MVKETTYYDILGVNVDASPAEIKKAYYIKARIVHPDKNPGDSRAAENFQILGEAYQILSDPKKREAYDKHGKAGLPQESMIDPTAVFGMLFGSELFEDYIGKLAMASLSSIEAEEVSLDLEVRMQRIQERMKTWQKEREQKLIVTLKDRLQPFVDGRTDEFVSWGNSEACDLSNAAFGEAMLHTIGYIYTRKAARELGKDKRYMKVPFLAEWVRDKGHWIKSQVMAASGAVSLIQIHEELKKLNQGENKEENLVKAIENKKDAMINSLWQINVIDIESTLSHVSQAVLKDPGASKDVLRLRAKALKKLGTIFQGAKAAYNRENSLRHESDRPRDTSSSS* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2320 339 PANTHER BNAA01G05380D PROTEIN 1 329 - -
Lja1g2320 339 CDD DnaJ 6 60 IPR001623 -
Lja1g2320 339 SUPERFAMILY Chaperone J-domain 2 100 IPR036869 -
Lja1g2320 339 Pfam X-domain of DnaJ-containing 135 322 IPR026894 -
Lja1g2320 339 Gene3D DnaJ domain 1 86 IPR036869 -
Lja1g2320 339 Coils Coil 240 263 - -
Lja1g2320 339 SMART dnaj_3 5 63 IPR001623 -
Lja1g2320 339 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 1 329 - -
Lja1g2320 339 ProSiteProfiles dnaJ domain profile. 6 71 IPR001623 -
Lja1g2320 339 Pfam DnaJ domain 6 68 IPR001623 -
Lja1g2320 339 PRINTS DnaJ domain signature 43 63 IPR001623 -
Lja1g2320 339 PRINTS DnaJ domain signature 63 82 IPR001623 -
Lja1g2320 339 PRINTS DnaJ domain signature 8 26 IPR001623 -
Lja1g2320 339 PRINTS DnaJ domain signature 26 41 IPR001623 -
Lja1g2320 339 Coils Coil 117 137 - -
Lja1g2320 339 ProSitePatterns Nt-dnaJ domain signature. 48 67 IPR018253 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2320 Lja-Chr1 26888099 26892536 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2320 7 68 Miscellaneous Gene Families AT5G49580 46.970 4.51e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2320 - - gmx:100787075 534.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2320 1 26888099 26892536 Lja1g2320 1 26888099 26892536 ECH