Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2319 ATGGAGGTGACAACCATGTCTGAGGCTCTGCAACTTCATGCCCAAATTCTGAAACTAGGTACTTCAAACAACGACGCTCCACGCAACTTCTCCAAGCTCTTCACCTTCGCCGCTCTCTCACCCTCCGGCGACCTCAACTATGCTCGTCTTCTTCTCACCTCCAATCCCGCTTTAAACTCTTACTACTACAACACCATGCTCCGAGCTTATTCTCTAAGTTCCGACCCGACCCATCATTTCCACGCTCTTTCTCTCTTCATCTTCATGCTCCGACGACCCACCCACGGTGTTCCCGCACCGGACAACTTCACTTTTCCCTTCGTGCTCAAATGCTGTGCTCGTTTGAAGCTTGCCCGTCAAGGAAAACAGCTCCATGGTTTCATTACTAAGATGGGTTTTGGCTCTGATTGCTATATCATGAATGCGCTGATCCACATGTACTCTGTGTTTGGTGATTTGGGTGTTGCGCGTGAACTGTTTGATAGAATGCCTGATAGAGATGTGGTTTCTTGGACGTCGTTGATTGATGGGCTTGTTGATCATGATCGCCCTGTCGAGGCAATTGAGCTGTTTGGGAGAATGTTGGAAGCGGGAGTTGAGGTGAATGATGCTACGGTGGTGTCTGTTTTGAGAGCGTGTGCGGACTCGGGAGCATTGAGCATGGGGAGGAAAGTGCATGGGATTGTGAAGGAAAAGAAGAGAATTGAATGTAAGTGTAATGTTAGCACTGCGCTTATTGATATGTATGCGAAAAGTGGGTGTATAGAGAGTGCTAAGAAGGTATTTGATGGTGTCGTGGACAAAGATGTTTATGTTTGGACTGCAATGATTTCTGGCCTTGCTAGCCACGGGCTATGCAAGGAAGCTATTGACTTGTTTCTTGAAATGGAAACATGCAATGTGAAACCTGATGAGAGGACTATGACAGCAGTTTTATCAGCATGTAGGAATGCAGACTTGGTTCGTGAAGCTTACATGGTTTTCAGTGATATGAAGAAGCGTTACGGTATAGAACCTACAATTCAGCATTTTGGTTGTGTAGTGGACCTTCTTGCTAGAGCAGGGTGTTTGAAGGAAGCTGAAGATTTCATGAATGCAATGCCTATGAAACCCGATGCGGTTCTTTGGAGGACCCTGATATGGGCCTGCAAAGTTCATGAGGATACTGAAAGAGCTGAGCGTTTGATGAAGCAGCACCTTGAGATGGGTGTGGATGATAGTGGAAGTTACATACTAGCTAGTAATGTCTATGCTTCGGTAGGGAAGTGGTCTAACAAGGCAGAGGTTAGAGAGTTGATGAATAAAAAGGGACTCATAAAGCCACCAGGGTCTAGTAGGATTGAAGTTGATGGGGCTTTACATGAGTTTGTGATGGGAGATTATAATCACCCTGAAGCAGATAACATATTTGTCAAATTGGATGAGATGGTAGATAAACTTAAAAAAGAAGGGTATAATCCGAAATTATCAGAGGTCTTACTCGAGATAGATGATGAGGAAAAAGCCACCCAGTTGCTTCACCATAGCGAGAAGCTAGCTCTTGCTTATGGACTGATAAGGACAAGTCAGGGGTCCAAAATCAGGATTGTCAAGAACCTAAGGTCTTGCGAAGACTGTCACGAGTTTATGAAACTAATCTCTAAGATATACCAAAGAGATATCATTGTGAGAGACAGAATTCGTTTCCATCATTTCAAAAATGGAGATTGCTCTTGTAAGGATTATTGGTAG 1731 0.4448 MEVTTMSEALQLHAQILKLGTSNNDAPRNFSKLFTFAALSPSGDLNYARLLLTSNPALNSYYYNTMLRAYSLSSDPTHHFHALSLFIFMLRRPTHGVPAPDNFTFPFVLKCCARLKLARQGKQLHGFITKMGFGSDCYIMNALIHMYSVFGDLGVARELFDRMPDRDVVSWTSLIDGLVDHDRPVEAIELFGRMLEAGVEVNDATVVSVLRACADSGALSMGRKVHGIVKEKKRIECKCNVSTALIDMYAKSGCIESAKKVFDGVVDKDVYVWTAMISGLASHGLCKEAIDLFLEMETCNVKPDERTMTAVLSACRNADLVREAYMVFSDMKKRYGIEPTIQHFGCVVDLLARAGCLKEAEDFMNAMPMKPDAVLWRTLIWACKVHEDTERAERLMKQHLEMGVDDSGSYILASNVYASVGKWSNKAEVRELMNKKGLIKPPGSSRIEVDGALHEFVMGDYNHPEADNIFVKLDEMVDKLKKEGYNPKLSEVLLEIDDEEKATQLLHHSEKLALAYGLIRTSQGSKIRIVKNLRSCEDCHEFMKLISKIYQRDIIVRDRIRFHHFKNGDCSCKDYW* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2319 576 Pfam PPR repeat 243 267 IPR002885 -
Lja1g2319 576 Pfam PPR repeat 344 368 IPR002885 -
Lja1g2319 576 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 269 303 IPR002885 -
Lja1g2319 576 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 1 564 - -
Lja1g2319 576 PANTHER TRANSCRIPT PROCESSING PROTEIN, PUTATIVE-RELATED 1 564 - -
Lja1g2319 576 Pfam E motif 386 448 IPR046848 -
Lja1g2319 576 Pfam DYW family of nucleic acid deaminases 484 576 IPR032867 GO:0008270
Lja1g2319 576 Gene3D Tetratricopeptide repeat domain 242 451 IPR011990 GO:0005515
Lja1g2319 576 Gene3D Tetratricopeptide repeat domain 74 241 IPR011990 GO:0005515
Lja1g2319 576 Pfam PPR repeat family 166 214 IPR002885 -
Lja1g2319 576 Pfam PPR repeat family 268 315 IPR002885 -
Lja1g2319 576 TIGRFAM PPR: pentatricopeptide repeat domain 169 202 IPR002885 -
Lja1g2319 576 TIGRFAM PPR: pentatricopeptide repeat domain 307 340 IPR002885 -
Lja1g2319 576 TIGRFAM PPR: pentatricopeptide repeat domain 271 305 IPR002885 -
Lja1g2319 576 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 167 201 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2319 Lja-Chr1 26881143 26884436 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2319 82 576 Glycoside Hydrolase AT3G49170 37.876 1.58e-117 366
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2319 - - aip:107613729 893.649
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2319 1 26881143 26884436 Lja1g2319 1 26881143 26884436 ECH