Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2317 ATGTCCGGCCCCCTCGATTTCTTCGCCAGACCTTGTTTTGAGGGGTTTTCCGGCAGTGATGAGAAGAGAGAAAGGAGATCTGATTTCGAGAACTCTGAGGATGAAAGGAGGACGAGAATCGGATCGCTCAAGAAGAAAGCGCTCAGTGCGTCTACCAAATTCAAGCATTCTCTTAGGAAGAAGAGTAGCCGGAGGAAAAGTGACGGCCGCGTCAGCTCCGTTTCCATCGAGGATGTCAGGGATGTTGAGGAGCTTCAGGCTGTTGATGCGTTTCGCCAGTCCTTGATCATGGACGAGTTGCTTCCACAGGCATTTGATGATTACCATATGATGTTGAGATTTTTGAAAGCAAGGAAGTTTGATATTGAAAAAGCAAAGCATATGTGGGCTGAAATGCTACAATGGAGGAAAGAATTTGGTGCTGACACCATTATGCAGGATTTTGAGTTCCAGGAGTTAGATGAAGTTGTGAGGTACTACCCACACGGCCATCATGGCGTTGATAAGGAGGGAAGACCTGTTTATATTGAGAGACTTGGAAAAGTTGATCCCAACAAGCTTATGCAAGTTACAACTATGGATAGATATGTGAGGTACCATGTGCAAGAGTTTGAAAAGTCTTTTGCGATAAAGTTTCCTGCTTGCACTATTGCTGCCAAGAGGCACATAGATTCAAGTACCACGATCTTAGATGTCCAAGGAGTGGGCCTTAAGAACTTCACAAAGTCCGCCCGGGAACTCATTACGCGATTGCAGAAGGTTGATGGTGACAATTACCCTGAGACACTCTGCCAAATGTTTATTATCAATGCTGGCCCTGGATTCAGGCTGTTGTGGAACACTGTCAAGTCTTTTCTTGATCCCAAAACAACTTCAAAGATTCATGTTCTTGGAAACAAGTATCATAGCAAATTGCTTGAAGTAATTGATGCCAGTGAGTTGCCCGAGTTTCTGGGAGGTGCCTGCACTTGTGAAGATCAGGGAGGCTGCCTTAGATCTGATAAAGGGCCCTGGAAAAATCCCGAAATATTGAAGTTTCTGCAGATGGTTCTCAATGGTGAGCCTCGGCGGGCAAGGCAAGTAGTAAAAGTTCTGAACAGTGAAGGGAAGGTTATTGCGTATGCGAAGCCACGATACCCAACGGTCAAAGGCAGCGATACATCCACTGCTGAATCGGGATCAGAAGCTGAAGACATAGCTTCTCCAAAAGCGATGAAGAACTATTCACATCTTAGGCTGACCCCTGTTCGTGAGGAAGCTAAGATAGTTGGAAAGTCAAGTTATACCAATAACTTTTCTGGGTATGATGAATACGTTCCAATGGTAGACAAACCTGTGGATGCTGTCTTGAAGAAGCAAGCATCTTTGCAGAGGTCTTATACTTCACAAGGGGCACCTTCTCGTCCTGCCACACAGAGAACTCCAGAAGGGATTCAAGCTCGGATTTTGGTTGCAATAACTGCCTTCTTGTTGACCATATTTACTATTTTCCGTCAAGTTGCGTGCCGGGTGACCAAGAAACTTCCTGCAATATCATCTAATCATGATCAGAGTACTTCAGAACCAACTTTTGATACAACTGTTGTGGAGGTTATTCCTTCTTCATCAACTCCAGCACATACAGAGGAAAATCTCCTTCCCTCCATGCTGAAAAGGTTAGGAGAGCTTGAGGAGAAGGTTGACACACTCCAATCTAAGCCGTCTGAGATGCCTTACGAGAAAGAGGAATTGTTGAATGCTGCTGTATGCCGGGTGGATGCTTTGGAAGCTGAGTTAATTGCTACTAAAAAGGCTCTCTATGAGGCTCTAATGAGGCAAGAAGAGCTTCTTGCTTACATTGATAGGCAAGCAGAAGCCAAGTTACGGAAAAAGAGGTTTTGCTGGTGA 1887 0.4499 MSGPLDFFARPCFEGFSGSDEKRERRSDFENSEDERRTRIGSLKKKALSASTKFKHSLRKKSSRRKSDGRVSSVSIEDVRDVEELQAVDAFRQSLIMDELLPQAFDDYHMMLRFLKARKFDIEKAKHMWAEMLQWRKEFGADTIMQDFEFQELDEVVRYYPHGHHGVDKEGRPVYIERLGKVDPNKLMQVTTMDRYVRYHVQEFEKSFAIKFPACTIAAKRHIDSSTTILDVQGVGLKNFTKSARELITRLQKVDGDNYPETLCQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYHSKLLEVIDASELPEFLGGACTCEDQGGCLRSDKGPWKNPEILKFLQMVLNGEPRRARQVVKVLNSEGKVIAYAKPRYPTVKGSDTSTAESGSEAEDIASPKAMKNYSHLRLTPVREEAKIVGKSSYTNNFSGYDEYVPMVDKPVDAVLKKQASLQRSYTSQGAPSRPATQRTPEGIQARILVAITAFLLTIFTIFRQVACRVTKKLPAISSNHDQSTSEPTFDTTVVEVIPSSSTPAHTEENLLPSMLKRLGELEEKVDTLQSKPSEMPYEKEELLNAAVCRVDALEAELIATKKALYEALMRQEELLAYIDRQAEAKLRKKRFCW* 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2317 628 MobiDBLite consensus disorder prediction 16 42 - -
Lja1g2317 628 Gene3D - 140 350 IPR036865 -
Lja1g2317 628 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 152 326 IPR001251 -
Lja1g2317 628 MobiDBLite consensus disorder prediction 1 52 - -
Lja1g2317 628 CDD SEC14 153 320 IPR001251 -
Lja1g2317 628 Pfam CRAL/TRIO, N-terminal domain 108 130 IPR011074 -
Lja1g2317 628 Gene3D - 50 139 - -
Lja1g2317 628 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 3 623 - -
Lja1g2317 628 SUPERFAMILY CRAL/TRIO domain 152 346 IPR036865 -
Lja1g2317 628 SUPERFAMILY CRAL/TRIO N-terminal domain 82 148 IPR036273 -
Lja1g2317 628 SMART sec14_4 152 323 IPR001251 -
Lja1g2317 628 Pfam CRAL/TRIO domain 159 320 IPR001251 -
Lja1g2317 628 Coils Coil 546 566 - -
Lja1g2317 628 SMART CRAL_TRIO_N_2 107 132 IPR011074 -
Lja1g2317 628 PRINTS Cellular retinaldehyde-binding protein signature 110 132 - -
Lja1g2317 628 PRINTS Cellular retinaldehyde-binding protein signature 279 298 - -
Lja1g2317 628 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH8 3 623 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2317 Lja-Chr1 26842256 26848060 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2317 86 317 Acyl Lipid Metabolism Gene Families AT5G47730 30.041 1.71e-21 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2317 - - gmx:100783495 1058.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2317 1 26842256 26848060 Lja1g2317 1 26842256 26848060 ECH