Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2315 ATGATGACTGGTGATTCTTTTGTAGTCTCTAGTGGAAATGGCAATGGCAGTATCAACCCACTACCTAATCTGCAGAGGACTTACCAAGTGGTGGTTGCTGCCACCAAAGATATGGGCATTGGTAAGGATGGAAAATTACCCTGGAGATTATTTACCGATCTCAAGTTTTTTAAGGAGATCACTACCGCAACATCTGATCCCGGGAAGAAGAATGCCATAGTAATGGGAAGAAAAACATGGGAGAGTATCCCTCTTAAGTATAGGCCTCTACCCGGTCGGCTTAATGTTGTTCTCACACGCTCAGGTAGCTTTGATATTGGAACGGCAGAGAATGTTGTGATTTGTGGAAGTATCTCTTCTGCATTAGAACTTTTAGCTGCTTCTCCTTACTGTCTGTCAATTGAGAAAGTATTTGTCATAGGAGGCGGTCAGATATTTAGAGAAGTTCTTAATGCACCTGGATGTGAAGCTATCCACTTCACTGAAATTCATGCAAGCATTGAGTGTGACACTTTTATGCCTCCAGTTGATTCCACTAAATATCAGTTATGGTACTCATCCTTTCCTAAGGTGGAAAACGACATCCGCTATTCTTTCGCCACGTATGTGCGTGTTCAGAGTTCTGCAGCAGAGTCCCTGAGTCAGAATACTGATCCACTTTTTGATAATAATTCAGATTCCCTAAAGTTTGAGGTTCAAAACTTTGACTTTCTTCCTGAAATGATTCTTCAGAGACATGAGGAATACATGTATCTTAGGCTGATTCAAGAAATCATATCTGAAGGTACAACTAAGGATGATAGGACAGGGACTGGTACCTTGTCAAAATTTGGTTGCCAGATGAGGTTCAATCTCCGCAGAAGCTTTCCTCTTCTAACAACCAAGAAAGTATTTTGGCGAGGGGTTGTTGAAGAACTTCTTTGGTTTATCAGTGGCTCAACAAATGCCAAGGTGTTGCAGGAAAAAGGCATTCATATATGGGATGGCAATGCATCCAGAGAATACCTGGATAGTATTGGTTTGACAGAGAGGGAGGAGGGTGACTTAGGACCTGTTTATGGGTTTCAGTGGAGGCACTTTGGTGCCAGGTATAGTGACATGCATAAGGACTACTCCGGCCAAGGATATGATCAGCTTTTAGATGTTATTAACAAGATAAAGCATAATCCTAATGATCGACGTATCATTCTCTCTGCATGGAATCCAGTTGATCTTAAATTGATGGCACTTCCACCCTGCCACATGTTTGCACAGTTCTTTGTAGCAAATGGAGAATTATCATGTCAAATGTATCAGCGATCTGCTGACATGGGCCTGGGCGTGCCATTTAATATTGCATCTTATGCGCTCCTGACATGCATGATTGCTCATGTTTGTGAACTCGTTCCAGGTGATTTCGTCCATGTTATTGGGGATGCACATGTTTACCACAATCATGTGCGGCCTTTGCAGGAGCAGCTTCTTAACCTACCTAAACCTTTTCCTACTTTGAAGATAAATTCAGAGAAGAAAGATATAGACTCTTTTGTAGCTGCTGATTTCAAGCTTGTAGGCTATAATCCTCACCAGAAGATTGAGATGAAGATGGCAGTTTAA 1596 0.4185 MMTGDSFVVSSGNGNGSINPLPNLQRTYQVVVAATKDMGIGKDGKLPWRLFTDLKFFKEITTATSDPGKKNAIVMGRKTWESIPLKYRPLPGRLNVVLTRSGSFDIGTAENVVICGSISSALELLAASPYCLSIEKVFVIGGGQIFREVLNAPGCEAIHFTEIHASIECDTFMPPVDSTKYQLWYSSFPKVENDIRYSFATYVRVQSSAAESLSQNTDPLFDNNSDSLKFEVQNFDFLPEMILQRHEEYMYLRLIQEIISEGTTKDDRTGTGTLSKFGCQMRFNLRRSFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKGIHIWDGNASREYLDSIGLTEREEGDLGPVYGFQWRHFGARYSDMHKDYSGQGYDQLLDVINKIKHNPNDRRIILSAWNPVDLKLMALPPCHMFAQFFVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCELVPGDFVHVIGDAHVYHNHVRPLQEQLLNLPKPFPTLKINSEKKDIDSFVAADFKLVGYNPHQKIEMKMAV* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2315 531 Pfam Dihydrofolate reductase 29 204 IPR001796 GO:0004146|GO:0046654
Lja1g2315 531 Gene3D Dihydrofolate Reductase, subunit A 16 207 IPR024072 -
Lja1g2315 531 PANTHER THYMIDYLATE SYNTHASE 1 2 531 IPR045097 GO:0016741
Lja1g2315 531 ProSitePatterns Thymidylate synthase active site. 393 421 IPR020940 GO:0004799|GO:0006231
Lja1g2315 531 SUPERFAMILY Thymidylate synthase/dCMP hydroxymethylase 236 531 IPR036926 -
Lja1g2315 531 Gene3D Thymidylate synthase/dCMP hydroxymethylase domain 240 531 IPR036926 -
Lja1g2315 531 PANTHER BIFUNCTIONAL DIHYDROFOLATE REDUCTASE-THYMIDYLATE SYNTHASE 2 531 - -
Lja1g2315 531 PIRSF DHFR-TS 13 531 IPR012262 GO:0004146|GO:0004799|GO:0006730
Lja1g2315 531 Hamap Thymidylate synthase [thyA]. 248 531 IPR000398 GO:0004799|GO:0006231
Lja1g2315 531 ProSitePatterns Dihydrofolate reductase (DHFR) domain signature. 39 61 IPR017925 GO:0004146
Lja1g2315 531 ProSiteProfiles Dihydrofolate reductase (DHFR) domain profile. 27 204 IPR001796 GO:0004146|GO:0046654
Lja1g2315 531 SUPERFAMILY Dihydrofolate reductase-like 1 204 IPR024072 -
Lja1g2315 531 CDD TS_Pyrimidine_HMase 251 484 IPR023451 -
Lja1g2315 531 PRINTS Thymidylate synthase family signature 426 452 IPR000398 GO:0004799|GO:0006231
Lja1g2315 531 PRINTS Thymidylate synthase family signature 408 423 IPR000398 GO:0004799|GO:0006231
Lja1g2315 531 PRINTS Thymidylate synthase family signature 382 401 IPR000398 GO:0004799|GO:0006231
Lja1g2315 531 PRINTS Thymidylate synthase family signature 289 310 IPR000398 GO:0004799|GO:0006231
Lja1g2315 531 PRINTS Thymidylate synthase family signature 464 481 IPR000398 GO:0004799|GO:0006231
Lja1g2315 531 CDD DHFR 31 203 IPR001796 GO:0004146|GO:0046654
Lja1g2315 531 TIGRFAM thym_sym: thymidylate synthase 250 531 IPR000398 GO:0004799|GO:0006231
Lja1g2315 531 Pfam Thymidylate synthase 250 531 IPR023451 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2315 Lja-Chr1 26830883 26835358 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2315 K13998 - gmx:547833 936.021
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2315 1 26830883 26835358 Lja1g2315 1 26830883 26835358 ECH