LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja1g2304	ATGGCGTCTGCTTGTGTGACCTTGAAAGCCAACACCACCCATCTAGCAAACTCAGAAAAAGGTTTCCTTTTTGGTCAAGACAATGGCTTTTTAGGGGAAAGAGTTAAAGGTGCCTGGGGGATGAATCAGTTGGGTAAATGTTTGACAGCTCAGAAGAGGGTTAAATCTGGGGCTGTATCTGCTGTTCTTACTTCAAATGATGCCAAAGAAGCCCTGACTTTGCAAGTGCCTTCATTCCTGAGACGAAAAGCTGATCCAAAAAATGTTATTTCTATCATATTGGGAGGAGGACCTGGGACACACCTCTTTCCTCTTACCAAACGATCTGCTACACCTGCGGTCCCAGTTGGTGGGTGCTACAGGCTTATAGACATCCCAATGAGCAACTGCATCAACAGTAGCCTCAACAAGATATTTGTGCTAACCCAGTTCAACTCTGCATCCCTCAACCGTCACATCTCCCGCACCTATTTCGGAAATGGCGTCAACTTTGGGGATGGATTTGTAGAGGTTCTGGCTGCTACTCAAACACCAGGAGAGGCGGGAAAGAAGTGGTTCCAAGGAACTGCAGATGCTGTGAGGCAATTTACATGGGTATTTGAGGATGCCAAAAACAGAAATGTCGAAAATGTATTGATCTTGGCTGGCGATCATCTATACCGAATGGATTACATGGACCTTGTTCAGAGTCACGTTGATAGAAATGCCGATATTACAGTTTCATGTGCTGCTGTGGGTAACAGCCGTGCATCGGATTATGGGTTGGTCAAGGTTGATGACAGAGGCAGTATCATCCAATTTTCAGAAAAACCAAAGGGTGCTGATCTGAAAGCAATGCAAGCAGATACTTCTCTTCTTGGGTTGTCACTCCATGATGCTTTGGAATCACCATATATTGCATCAATGGGGGTTTATGTATTCAAGACAGATGTTTTACTTAAGCTTCTGAAATGGAGATATCCTACATCGAATGACTTTGGATCTGAAATCATTCCTTCAGCTGTAAAGGAATACGATGTCCAATCATATATTTTCAGAGATTATTGGGAAGACATTGGCACAATAAAATCCTTTTATGATGCTAACCTTGCTCTTACAGAAGAGAGTCCAAAGTTCAAATTCTATGATCCGAAGACACCCATTTTCACATCTCCAGGATTCCTTCCTCCTACAAAGATTGATAAATGTCGGGTTGTCGATGCCATTATCTCCCATGGATGTTTCCTGCGAGAATGCACTGTCCAACACTCCATTGTAGGTGAACGCTCACGTTTAGATTATGGTGTTGATCTTCAGGACACCATAATGATGGGAGCAGATTATTACCAAACTGAATCTGAAATTGCTTCTCTGCTGGCAGAGGGGAAGGTCCCTATTGGGATCGGACGAAATACCAAAATCAGGAACTGTATTATAGACAAGAATGCAAAGATTGGGAAAGATGTCATCATCACCAACAAAGATGGCGTTCAAGAAGCGGATAGATCAGAAGATGGGTTTTACATTCGATCAGGAATCACCATTGTAATGGAGAAGGCAACAATAGAAGATGGCACAGTCATATAA	1566	0.4298	MASACVTLKANTTHLANSEKGFLFGQDNGFLGERVKGAWGMNQLGKCLTAQKRVKSGAVSAVLTSNDAKEALTLQVPSFLRRKADPKNVISIILGGGPGTHLFPLTKRSATPAVPVGGCYRLIDIPMSNCINSSLNKIFVLTQFNSASLNRHISRTYFGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFTWVFEDAKNRNVENVLILAGDHLYRMDYMDLVQSHVDRNADITVSCAAVGNSRASDYGLVKVDDRGSIIQFSEKPKGADLKAMQADTSLLGLSLHDALESPYIASMGVYVFKTDVLLKLLKWRYPTSNDFGSEIIPSAVKEYDVQSYIFRDYWEDIGTIKSFYDANLALTEESPKFKFYDPKTPIFTSPGFLPPTKIDKCRVVDAIISHGCFLRECTVQHSIVGERSRLDYGVDLQDTIMMGADYYQTESEIASLLAEGKVPIGIGRNTKIRNCIIDKNAKIGKDVIITNKDGVQEADRSEDGFYIRSGITIVMEKATIEDGTVI*	522

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja1g2304	521	SUPERFAMILY	Nucleotide-diphospho-sugar transferases	87	482	IPR029044	-
	Lja1g2304	521	ProSitePatterns	ADP-glucose pyrophosphorylase signature 2.	185	193	IPR005836	GO:0005978\|GO:0008878
	Lja1g2304	521	Gene3D	Hexapeptide repeat proteins	387	521	-	-
	Lja1g2304	521	Gene3D	Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A	76	386	IPR029044	-
	Lja1g2304	521	Pfam	Nucleotidyl transferase	91	367	IPR005835	GO:0009058\|GO:0016779
	Lja1g2304	521	ProSitePatterns	ADP-glucose pyrophosphorylase signature 3.	300	310	IPR005836	GO:0005978\|GO:0008878
	Lja1g2304	521	CDD	LbH_G1P_AT_C	389	515	-	-
	Lja1g2304	521	ProSitePatterns	ADP-glucose pyrophosphorylase signature 1.	95	114	IPR005836	GO:0005978\|GO:0008878
	Lja1g2304	521	PANTHER	GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED	1	521	IPR011831	GO:0005978\|GO:0008878
	Lja1g2304	521	CDD	ADP_Glucose_PP	92	352	-	-
	Lja1g2304	521	SUPERFAMILY	Trimeric LpxA-like enzymes	384	521	IPR011004	-
	Lja1g2304	521	PANTHER	GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE	1	521	-	-
	Lja1g2304	521	TIGRFAM	glgC: glucose-1-phosphate adenylyltransferase	89	486	IPR011831	GO:0005978\|GO:0008878

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja1g2304	Lja-Chr1	26732311	26736954	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja1g2304	K00975		-	gmx:100796717	894.804

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja1g2304	1	26732311	26736954	Lja1g2304	1	26732311	26736954	ECH