Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2298 ATGGGCGAGGTATCTGAAGCAGCGATGACGAAGAGGAAGAAGAAGGGTCGCCCTTCTCTTTTGGATCTTCAAAAGCGATCTCTCAAGAAACAACAAAAGCAACAACAATACCGTCCTCCGAATCCCAATTCATCCAATTCCAACGTCCCTCCGCCGCAGCACGATTACGACGACGACGACGAGCGAAAAGACAAGAAGCGCAAACTCCTCGTCGGCTTGAATTCCCATCTCCACCACCACCACCACCCAACATTATTCCCCAATTCCGCCGATCCCGATGCCAATCACAAACGCCGCCGCGGATCAGATGAAACGCCGGATGGAAAGGTTTCGAAAGCGACTGAAGGCAAACATGGTTCACAGGGGGAGACCGGTCCCACTACACCTTTGCCAGACAAAAAGCTCTTGCTGTTTATCCTTGACAGGCTTCAAAAAAAGGACACTCATGGGGTATTCTCTGACCCTGTGGATCCAGAGGAGCTTCCTGATTATCATGATGTCATTAAACACCCTATGGATTTTGGCACTGTAAGGAACAAAGTGGATGGAGGACTATATGCCAACTTAGAACAATTTGAGAATGATGTGTTCTTGATATGCTCTAATGCGATGCAGTACAATTCAGCGGATACTATTTACTATCGACAGGCCCGAGCTATGCAAGAGATCGCGAAGAAGGACTTTGAGAATTTGAGACAAGACAGTGATGATGATGATGATGGTGATGATAGTGATCCACAACCCAAAATTGTGCAAAGAGGAAGGCCACCAGGAAAGCTCTCAAGAAAGCCACGGGGCATGTCTCCTTCAGAGCGTGTTGGCCCTGAATCTTCCTCTGATGCAACTCTTGCTTCTGGTGGGGATATTGCTAGTGGCTCTAATGGTTATAATCTAAGAAAAGGGGTAGCCAAATTTCATCCTACAGATTCATCAGCTAGGGCTTCCCACAGCAATTTTAACAGTGGAGGTTATACTGGTTGGAGTTCTGAATGGGAGAATGAATTTCCAGCTTCGGTTGTAAAAGCCGTGTTAAGGTATGGAAAGAAGCAGTTTGTGGTTGATGAAACCAGGCGTGACACATATAAAAACTCAGTGGCTTTAGGGAGTGAACCACCAGTATTGGCCACATTTGGAGATGATTTCAAGCAACTTCTCGCAGTAGGTTTACATGTGAAGCATAGCTACGCAAGAAGCCTAGCCCACTTTGCTGCAGATCTTGGTCCTGTTGTTTGGGAGATTGCTGCAAAGAAAATCCGCAGTGTTCTGCCAGCAGGACATGAATTTGGTCCGGGATGGGTAAGTGAAGAGGATGTGTCACAGAGACAACACTTCCCGGTTTTTGGTGAGGAGAGAAATTCAGACCCTCCTGTACCAGAGGATTATAGCAGTAGATTTCTTTCTTGTTCTTCTGGCTCATCCTCTCTTGCAAATACATCATCATGCTTGCCAAGTGGAGACATGGCAATTAATAGAGAATCTGGTTACCAAAATGAATGGAATCCATCCAACAGTGTTGGTGGTGAGAGTGAATCCATGATTCATGGGAGGATTCATCAGGAATCTATGGCACATTCTGATGATTTGGGTTCTAATGGTCGGTTAGGTTCTAACTTTTCTCCTCAAATGAAGATGGTTAGACTTTCTGACTTAACCGGGTCGTCGAGTGGTGGGAATGTTCCTCAAATGTTTGACATGGATCCAGTAAGCAGCCTCACCAGCCGCGCCGCACCTGCAAATGTTAATCCACCTCTCAGGACCCAGTTCTTGAACAACTTTAGTCAATTAGATTCCAGCAGTTTATTAGCTCGGGAATCTGGTTTTGAGTCACAAAGATTGCCTCAAGGGCTTGCTGGAAAGTCATCTTGGCAGGGATTTGAAGTTCCTACTAAACAGAACTCATTTTCACTTGCTAATGACTTAAATGGGAAGATTGGAGCAACAAATCCATCCAGTTCCAATGTGGAGGCTGGTTCTCTGCTGCAGCCAAATCTTGCATTGCAGCTATGA 2007 0.4589 MGEVSEAAMTKRKKKGRPSLLDLQKRSLKKQQKQQQYRPPNPNSSNSNVPPPQHDYDDDDERKDKKRKLLVGLNSHLHHHHHPTLFPNSADPDANHKRRRGSDETPDGKVSKATEGKHGSQGETGPTTPLPDKKLLLFILDRLQKKDTHGVFSDPVDPEELPDYHDVIKHPMDFGTVRNKVDGGLYANLEQFENDVFLICSNAMQYNSADTIYYRQARAMQEIAKKDFENLRQDSDDDDDGDDSDPQPKIVQRGRPPGKLSRKPRGMSPSERVGPESSSDATLASGGDIASGSNGYNLRKGVAKFHPTDSSARASHSNFNSGGYTGWSSEWENEFPASVVKAVLRYGKKQFVVDETRRDTYKNSVALGSEPPVLATFGDDFKQLLAVGLHVKHSYARSLAHFAADLGPVVWEIAAKKIRSVLPAGHEFGPGWVSEEDVSQRQHFPVFGEERNSDPPVPEDYSSRFLSCSSGSSSLANTSSCLPSGDMAINRESGYQNEWNPSNSVGGESESMIHGRIHQESMAHSDDLGSNGRLGSNFSPQMKMVRLSDLTGSSSGGNVPQMFDMDPVSSLTSRAAPANVNPPLRTQFLNNFSQLDSSSLLARESGFESQRLPQGLAGKSSWQGFEVPTKQNSFSLANDLNGKIGATNPSSSNVEAGSLLQPNLALQL* 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2298 668 MobiDBLite consensus disorder prediction 272 290 - -
Lja1g2298 668 Coils Coil 214 234 - -
Lja1g2298 668 PANTHER BROMODOMAIN CONTAINING PROTEIN 8 465 - -
Lja1g2298 668 MobiDBLite consensus disorder prediction 33 52 - -
Lja1g2298 668 SUPERFAMILY Bromodomain 117 237 IPR036427 GO:0005515
Lja1g2298 668 PANTHER BROMODOMAIN-CONTAINING PROTEIN-RELATED 8 465 - -
Lja1g2298 668 SMART bromo_6 125 233 IPR001487 GO:0005515
Lja1g2298 668 ProSiteProfiles Bromodomain profile. 144 214 IPR001487 GO:0005515
Lja1g2298 668 MobiDBLite consensus disorder prediction 77 131 - -
Lja1g2298 668 MobiDBLite consensus disorder prediction 92 116 - -
Lja1g2298 668 Pfam Bromodomain 139 218 IPR001487 GO:0005515
Lja1g2298 668 Gene3D - 130 245 IPR036427 GO:0005515
Lja1g2298 668 PRINTS Bromodomain signature 177 195 IPR001487 GO:0005515
Lja1g2298 668 PRINTS Bromodomain signature 147 160 IPR001487 GO:0005515
Lja1g2298 668 PRINTS Bromodomain signature 161 177 IPR001487 GO:0005515
Lja1g2298 668 PRINTS Bromodomain signature 195 214 IPR001487 GO:0005515
Lja1g2298 668 MobiDBLite consensus disorder prediction 1 63 - -
Lja1g2298 668 MobiDBLite consensus disorder prediction 232 290 - -
Lja1g2298 668 CDD Bromodomain 132 228 - -
Lja1g2298 668 ProSitePatterns Bromodomain signature. 149 206 IPR018359 -
Lja1g2298 668 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2298 Lja-Chr1 26704580 26708910 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2298 K22184 - gmx:100811115 838.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2298 1 26704580 26708910 Lja1g2298 1 26704580 26708910 ECH