Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2292 ATGGCTGGAGGACCACCCAACATGGATCAGTTCGAATCGTTTTTCCGCAGAGCAGATTTAGACGGAGATGGCAGAATCAGTGGTGCTGAAGCTGTCTCTTTCTTTCAGGGATCCAACTTGTCCAAACAAGTTCTCGCTCAGGTGTGGATGTATGCTGATCAAGCAAAAACCGGTTTCCTTGGGCGGACTGAGTTTTACAATGCTCTGAGATTAGTAACTGTTGCTCAGAGTAAGCGAGATTTAACGCCTGATATTGTTAAGGCAGCGTTATTTGGTCCCGCTGCTGCTAAAATCCCTGCACCGCAGATCAATCTTGCTGCTATACCTCAACCACGTCCGAATCCAGCACCCCCGCAGATGGGTGTAACAGCACCCCCGCAGATGGGTGTAACAGCACCCCGGCAGATGGGTGTAACAACACCCCCGTCGAGTCAAAATTTTGCCTATAGAGGACAGGGCTTACCGGGGCCTGTTGCGGCGAACCAGCAATATTTTCCTTCTCAGCAGAGTCAGACCATGAGACCACCTCAGTCCATGCCTGTTGGTACAGTACCCCGTCCACAACAGGGTTTTGGAGGTCCAAATGTTTCGCAAGGATTTAACATGGCTGGTCACAATGTCCCAAATCCTGGCATCTCAAATGATTGGAGTAGTGGAAGGACTGGTATGCCTCCTGCTAGGCCTGCAGGAATCACTCCATCTGTTGGCTTACAGACGTCAACGCCACTCTCCTCAGTGTCCCAGTCCCAGCCAGGAAATACTAATGCCAGAGCATTAGCTGTTTCTGGAAATGGGTACTCCTCCAATTCAGTTTTGGGCAATGATTTGTTCTCTGCTGCCTCATCCACTCCGAAACAGGAACCTCGTGGGCAGAATTATTCTGTTAGCAGTGCACCTGCCTCATCAGCAATCGTTCCTGCTTCGTCTGGTGCCCAGCCTGCAAGTAAGCAAAGTTCACTTGATCCTGTGCAGAGGGCATTGGCTGCATTCTCAATGCAGCCTACAAGTGCAAACAGTCAGTTTCAGCGACCGCAGTCTGCACCACCCACAAGCCAACATATTTCACCACCAGCTGTTTCTCCGCTTACATCAGCTGGGATATCAGTTGGAGTTGCAAGTACTAATCTGGACAATTCACAGCCTTCATGGCCAAAAATGAAACCTTCTGATGTGCAGAAGTATACAAAGGTGTTTATGGAAGTTGATACGGACAGGGATGGAAGAATCACTGGGGAGCAGGCACGCAGTCTATTTTTAAGTTGGAGATTACCAATAGATGTCTTAAAGAAGGTGTGGGACTTATCTGATCAGGATAATGATAGCATGCTTACTTTGAAGGAGTTTTGCTTTGCTCTTTATTTGATGGAGCGGTACAGGGAAGGTCATACTCTTCCACAGTCCCTTCCAAGGAATGTTATGTTAGATGAGACATTGCTGTCTATGACTGGGCATCCAAAAATTAATTATGGAAATGCAGCCTGGGGTGTCGGACCAGGTTTTCAACAGCAACAAGGGATTCCAGGTGCTCGGCCTGTGGCACCCTCAACTGGTTTGAGGCCGTCCGTGCAAGTAACTTCTGCCCAAGCTGATAACACTGTGCAGCCTAATCAGCAAAAGTCAGGAGCACCTGTGTTGGAGGATTCCCTTTTCAGTGACACAGATAGTGGTGAGCAGAAAGAGGCAACTGCTGGGAAGAAGGCTGAAGAAACACAGAATGCGATTTTAGATTCAAAAGAGAAGATTGAGTTTTACCGCGACAAAATGCAGGAACTAGTTCTATACAAAAGCAGATGTGATAATCGACTAAATGAGATTACAGAAAGGGCATCTGCAGATAAGCGTGAGGCAGAAACATTGGGCAAGAAATATGAAGAGAAATACAAACAAGTAGCCGAAATAGCGTCCAAATTGACTGTAGAAGAAGCTAAATTCCGTGATATACAGGAAAGGAAGGGGGAGTTGCAGCAAGCGATCGTCAAAATGGAACAAGGAGGCAGTGCAGATGGTATTCTTCAGGTCCGTGCTGAACGCATACAGTCAGATCTTGAGGAGTTACTTAAGGCTCTAGCTGAACGGTGCAAGAAGCATGGGATAGATGTGAAGTCAATTGCAATGATTCAGCTTCCTGCTGGTTGGCAACCTGGAATATCCGAGGATGCAGCTCTTTGGGATGAAGATTGGGATAAATTTGAAGATGAAGGATTTGCCAATGATCTCACGTTTGATTCCAAAGATGCGTCTTCAAAAACCAAACCTGCATTAGTTCAAGGAGAACAAAATTTCTCTGATGATAATTCAGTTCAAGGTTCACCTGTAACTGCAAATGGGAAGCAAGGAAATTTTGCTAATGGTGATTATACAGTTGGGGATGAATCTTCCTATGCACACAGTGAAGATGACATGGCTAGAAGCCCTCACGATAGCCCAGCTGGGAGGACTACAGTAGAGAGTCCTTCTCACGATTTTTCAAATGCCTTTGAAAAAGGTTCTGAAGCAGATGCAGAAACACACAGAAGTTTTGATGAATCAACTTGGGGTGCATTTGACAATAATGATGACGTGGACTCAATTTGGGGTGCCAAGGACTCTGACTTGGAGCACCAGAGGGATGTCTTTAAATCTGATGATTTTGGTATAAACCCAGTTAGAACAGGAACAAAAAGCCCATTTGCTTTTGATGATTCAGTGCCTGCAACACCACTTTCCAATTTCGGTAATTCTCCAAGGTACAGTGAGGCAGGGGATCACTTCTTTGACATGTCAAGGTTTGATTCCTTCAGCATTCCTGAAAGTGGATATTCTCAGTCTCCACAACAACCTGAGGGACTTACAAGATTTGATTCCATGAGTAGCAGCAAAGATTTTGGCTATAATAACGAGAAATTCTCAAGGTTTGATTCTATAAGTAGCAGCAGAGATTTCGGCTACAACAATCCCGAGAGGCTCACAAGGTTTGATTCCATGAGTAGCAGCAAAGACTTCGGCTTCGGTGGTGGTAGTCAGGGGCATGCGAGGTTTGACTCAATTAGTAGCAGCAAGGACTTTGGCTATAATGCTCCATTCTCTTTCGATGACTCGGATCCTTTCGGTTCCTCTGGTCCATTTAAGGTTACTTCAGAGAATCAATCTCCAAAGAAAGAATCTGATAATTGGAGGGCATTCTAG 3165 0.4585 MAGGPPNMDQFESFFRRADLDGDGRISGAEAVSFFQGSNLSKQVLAQVWMYADQAKTGFLGRTEFYNALRLVTVAQSKRDLTPDIVKAALFGPAAAKIPAPQINLAAIPQPRPNPAPPQMGVTAPPQMGVTAPRQMGVTTPPSSQNFAYRGQGLPGPVAANQQYFPSQQSQTMRPPQSMPVGTVPRPQQGFGGPNVSQGFNMAGHNVPNPGISNDWSSGRTGMPPARPAGITPSVGLQTSTPLSSVSQSQPGNTNARALAVSGNGYSSNSVLGNDLFSAASSTPKQEPRGQNYSVSSAPASSAIVPASSGAQPASKQSSLDPVQRALAAFSMQPTSANSQFQRPQSAPPTSQHISPPAVSPLTSAGISVGVASTNLDNSQPSWPKMKPSDVQKYTKVFMEVDTDRDGRITGEQARSLFLSWRLPIDVLKKVWDLSDQDNDSMLTLKEFCFALYLMERYREGHTLPQSLPRNVMLDETLLSMTGHPKINYGNAAWGVGPGFQQQQGIPGARPVAPSTGLRPSVQVTSAQADNTVQPNQQKSGAPVLEDSLFSDTDSGEQKEATAGKKAEETQNAILDSKEKIEFYRDKMQELVLYKSRCDNRLNEITERASADKREAETLGKKYEEKYKQVAEIASKLTVEEAKFRDIQERKGELQQAIVKMEQGGSADGILQVRAERIQSDLEELLKALAERCKKHGIDVKSIAMIQLPAGWQPGISEDAALWDEDWDKFEDEGFANDLTFDSKDASSKTKPALVQGEQNFSDDNSVQGSPVTANGKQGNFANGDYTVGDESSYAHSEDDMARSPHDSPAGRTTVESPSHDFSNAFEKGSEADAETHRSFDESTWGAFDNNDDVDSIWGAKDSDLEHQRDVFKSDDFGINPVRTGTKSPFAFDDSVPATPLSNFGNSPRYSEAGDHFFDMSRFDSFSIPESGYSQSPQQPEGLTRFDSMSSSKDFGYNNEKFSRFDSISSSRDFGYNNPERLTRFDSMSSSKDFGFGGGSQGHARFDSISSSKDFGYNAPFSFDDSDPFGSSGPFKVTSENQSPKKESDNWRAF* 1055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2292 1054 SUPERFAMILY EF-hand 379 472 IPR011992 -
Lja1g2292 1054 MobiDBLite consensus disorder prediction 759 846 - -
Lja1g2292 1054 MobiDBLite consensus disorder prediction 968 988 - -
Lja1g2292 1054 ProSiteProfiles EF-hand calcium-binding domain profile. 6 41 IPR002048 GO:0005509
Lja1g2292 1054 MobiDBLite consensus disorder prediction 518 544 - -
Lja1g2292 1054 CDD EH 394 460 IPR000261 GO:0005515
Lja1g2292 1054 PANTHER EH DOMAIN 5 958 - -
Lja1g2292 1054 MobiDBLite consensus disorder prediction 759 787 - -
Lja1g2292 1054 PANTHER CALCIUM-BINDING EF HAND FAMILY PROTEIN 5 958 - -
Lja1g2292 1054 MobiDBLite consensus disorder prediction 500 570 - -
Lja1g2292 1054 ProSiteProfiles EH domain profile. 7 97 IPR000261 GO:0005515
Lja1g2292 1054 PANTHER EH DOMAIN 1004 1054 - -
Lja1g2292 1054 CDD EH 11 77 IPR000261 GO:0005515
Lja1g2292 1054 Gene3D - 6 102 - -
Lja1g2292 1054 MobiDBLite consensus disorder prediction 826 842 - -
Lja1g2292 1054 SMART efh_1 10 38 IPR002048 GO:0005509
Lja1g2292 1054 SMART efh_1 393 421 IPR002048 GO:0005509
Lja1g2292 1054 SMART efh_1 427 455 IPR002048 GO:0005509
Lja1g2292 1054 SMART efh_1 44 72 IPR002048 GO:0005509
Lja1g2292 1054 Coils Coil 567 587 - -
Lja1g2292 1054 Pfam EF hand 12 28 IPR002048 GO:0005509
Lja1g2292 1054 MobiDBLite consensus disorder prediction 929 950 - -
Lja1g2292 1054 SUPERFAMILY EF-hand 5 85 IPR011992 -
Lja1g2292 1054 MobiDBLite consensus disorder prediction 216 261 - -
Lja1g2292 1054 ProSiteProfiles EF-hand calcium-binding domain profile. 423 458 IPR002048 GO:0005509
Lja1g2292 1054 Gene3D - 384 473 - -
Lja1g2292 1054 MobiDBLite consensus disorder prediction 333 349 - -
Lja1g2292 1054 MobiDBLite consensus disorder prediction 233 261 - -
Lja1g2292 1054 ProSiteProfiles EH domain profile. 390 469 IPR000261 GO:0005515
Lja1g2292 1054 MobiDBLite consensus disorder prediction 333 359 - -
Lja1g2292 1054 PANTHER CALCIUM-BINDING EF HAND FAMILY PROTEIN 1004 1054 - -
Lja1g2292 1054 MobiDBLite consensus disorder prediction 1032 1054 - -
Lja1g2292 1054 SMART eh_3 5 95 IPR000261 GO:0005515
Lja1g2292 1054 SMART eh_3 383 479 IPR000261 GO:0005515
Lja1g2292 1054 Pfam Cytoskeletal-regulatory complex EF hand 384 470 IPR000261 GO:0005515
Lja1g2292 1054 MobiDBLite consensus disorder prediction 792 806 - -
Lja1g2292 1054 MobiDBLite consensus disorder prediction 552 570 - -
Lja1g2292 1054 CDD Prefoldin 578 692 - -
Lja1g2292 1054 MobiDBLite consensus disorder prediction 278 298 - -
Lja1g2292 1054 MobiDBLite consensus disorder prediction 810 824 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2292 Lja-Chr1 26634837 26648438 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2292 1 1054 EF-hand Containing Proteins AT1G20760 52.432 0.0 951
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2292 K12472 - ccaj:109801808 1482.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2292 1 26634837 26648438 Lja1g2292 1 26634837 26648438 ECH